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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
ESALTQPPSASGSLGQSVTISC
1 - 22 22
CDR-L1
TGTSSDVGGYNYVS
23 - 36 14
LFR2
WYQQHAGKAPKVIIY
37 - 51 15
CDR-L2
EVNKRPS
52 - 58 7
LFR3
GVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
59 - 90 32
CDR-L3
SSYEGSDNFV
91 - 100 10
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
ESALTQPPSASGSLGQSVTISC
1 - 22 22
CDR-L1
TGTSSDVGGYNYVS
23 - 36 14
LFR2
WYQQHAGKAPKVIIY
37 - 51 15
CDR-L2
EVNKRPS
52 - 58 7
LFR3
GVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
59 - 90 32
CDR-L3
SSYEGSDNFV
91 - 100 10
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
ESALTQPPSASGSLGQSVTISC
1 - 22 22
CDR-L1
TGTSSDVGGYNYVS
23 - 36 14
LFR2
WYQQHAGKAPKVIIY
37 - 51 15
CDR-L2
EVNKRPS
52 - 58 7
LFR3
GVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
59 - 90 32
CDR-L3
SSYEGSDNFV
91 - 100 10
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
ESALTQPPSASGSLGQSVTISCTGTSSD
1 - 28 28
CDR-L1
VGGYNYVSWY
29 - 38 10
LFR2
QQHAGKAPK
39 - 47 9
CDR-L2
VIIYEVNKRP
48 - 57 10
LFR3
SGVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
58 - 90 33
CDR-L3
SSYEGSDNF
91 - 99 9
LFR4
VFGTGTKVTVLGQP
100 - 113 14
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
ESALTQPPSASGSLGQSVTISCTGT
1 - 25 25
CDR-L1
SSDVGGYNY
26 - 34 9
LFR2
VSWYQQHAGKAPKVIIY
35 - 51 17
CDR-L2
EV
52 - 53 2
LFR3
NKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
54 - 90 37
CDR-L3
SSYEGSDNFV
91 - 100 10
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
ESALTQPPSASGSLGQSVTISC------
1 - 22 22
AbM
ESALTQPPSASGSLGQSVTISC------
1 - 22 22
Kabat
ESALTQPPSASGSLGQSVTISC------
1 - 22 22
Contact
ESALTQPPSASGSLGQSVTISCTGTSSD
1 - 28 28
IMGT
ESALTQPPSASGSLGQSVTISCTGT---
1 - 25 25
CDR-L1 Chothia
TGTSSDVGGYNYVS--
23 - 36 14
AbM
TGTSSDVGGYNYVS--
23 - 36 14
Kabat
TGTSSDVGGYNYVS--
23 - 36 14
Contact
------VGGYNYVSWY
29 - 38 10
IMGT
---SSDVGGYNY----
26 - 34 9
LFR2 Chothia
--WYQQHAGKAPKVIIY
37 - 51 15
AbM
--WYQQHAGKAPKVIIY
37 - 51 15
Kabat
--WYQQHAGKAPKVIIY
37 - 51 15
Contact
----QQHAGKAPK----
39 - 47 9
IMGT
VSWYQQHAGKAPKVIIY
35 - 51 17
CDR-L2 Chothia
----EVNKRPS
52 - 58 7
AbM
----EVNKRPS
52 - 58 7
Kabat
----EVNKRPS
52 - 58 7
Contact
VIIYEVNKRP-
48 - 57 10
IMGT
----EV-----
52 - 53 2
LFR3 Chothia
-----GVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
59 - 90 32
AbM
-----GVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
59 - 90 32
Kabat
-----GVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
59 - 90 32
Contact
----SGVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
58 - 90 33
IMGT
NKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYC
54 - 90 37
CDR-L3 Chothia
SSYEGSDNFV
91 - 100 10
AbM
SSYEGSDNFV
91 - 100 10
Kabat
SSYEGSDNFV
91 - 100 10
Contact
SSYEGSDNF-
91 - 99 9
IMGT
SSYEGSDNFV
91 - 100 10
LFR4 Chothia
-FGTGTKVTVLGQP
101 - 113 13
AbM
-FGTGTKVTVLGQP
101 - 113 13
Kabat
-FGTGTKVTVLGQP
101 - 113 13
Contact
VFGTGTKVTVLGQP
100 - 113 14
IMGT
-FGTGTKVTVLGQP
101 - 113 13
Humanness

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Accession & Annotations
Accession 3mcg_2
Source PDB  3mcg  Submitted 09-MAY-1989  Updated 25-DEC-2019
Name
THREE-DIMENSIONAL STRUCTURE OF A LIGHT CHAIN DIMER CRYSTALLIZED IN WATER. CONFORMATIONAL FLEXIBILITY OF A MOLECULE IN TWO CRYSTAL FORMS
Organism
Homo sapiens
Human Subgroup Lambda Light chain subgroup V
Chain Type Light
Pairing None
Identical Protein Sequences PDB: 1a8j_H 1a8j_L 1mcw_M 2mcg_1 2mcg_2 3mcg_1
References
ELY R., HERRON N., HARKER M., EDMUNDSON B.
'THREE-DIMENSIONAL STRUCTURE OF A LIGHT CHAIN DIMER CRYSTALLIZED IN WATER. CONFORMATIONAL FLEXIBILITY OF A MOLECULE IN TWO CRYSTAL FORMS.'
J.MOL.BIOL. V. 210 601 1989 ISSN 0022-2836
Sequences
Amino Acid Sequence:
ESALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGV
PDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVT
LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASS
YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
No Chain
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
3mcg_2
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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