abYsis

Numbering & Regions

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Region Sequence Details

Regions Definition:

Region	Sequence Fragment	Residues	Length
LFR1	DIVMTQSPASLVVSLGQRATISC	1 - 23	23
CDR-L1	RASESVDSYGKSFMH	24 - 38	15
LFR2	WYQQKPGQPPKVLIY	39 - 53	15
CDR-L2	IASNLES	54 - 60	7
LFR3	GVPARFSGSGSRTDFTLTIDPVEADDAATYYC	61 - 92	32
CDR-L3	QQNNEDPPT	93 - 101	9
LFR4	FGAGTKLEMRRAD	102 - 114	13
Tail	AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR	115 - 215	101
			215

Humanness

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Accession & Annotations

Accession	1ai1_L
Source	PDB 1ai1 Submitted 06-NOV-1996 Updated 24-FEB-2009
Name	HIV-1 V3 LOOP MIMIC
Organism	Mus musculus
Chain Type	Light
Pairing	1ai1_H
Identical Protein Sequences	PDB: 1acy_L
References	GHIARA B., FERGUSON C., SATTERTHWAIT C., DYSON J., WILSON A. 'STRUCTURE-BASED DESIGN OF A CONSTRAINED PEPTIDE MIMIC OF THE HIV-1 V3 LOOP NEUTRALIZATION SITE.' J.MOL.BIOL. V. 266 31 1997 ISSN 0022-2836

Sequences

Amino Acid Sequence:

DIVMTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQQKPGQPPKVLIYIASNLES
GVPARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVS
IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
STLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR

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