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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVQLQESGTELVKPGASVKISCKAS
1 - 25 25
CDR-H1
GYISTDH
26 - 32 7
HFR2
AIHWVKQRPEQGLEWIGYI
33 - 51 19
CDR-H2
SPGNGD
52 - 57 6
HFR3
IKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR
58 - 98 41
CDR-H3
SYYGSSYVDY
99 - 108 10
HFR4
WGQGTTLTVSS
109 - 119 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSG
LYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
120 - 216 97
216
Region Sequence Fragment Residues Length
HFR1
EVQLQESGTELVKPGASVKISCKAS
1 - 25 25
CDR-H1
GYISTDHAIH
26 - 35 10
HFR2
WVKQRPEQGLEWIG
36 - 49 14
CDR-H2
YISPGNGDIK
50 - 59 10
HFR3
YNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR
60 - 98 39
CDR-H3
SYYGSSYVDY
99 - 108 10
HFR4
WGQGTTLTVSS
109 - 119 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSG
LYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
120 - 216 97
216
Region Sequence Fragment Residues Length
HFR1
EVQLQESGTELVKPGASVKISCKASGYIST
1 - 30 30
CDR-H1
DHAIH
31 - 35 5
HFR2
WVKQRPEQGLEWIG
36 - 49 14
CDR-H2
YISPGNGDIKYNEKFKV
50 - 66 17
HFR3
KATLTADQSSSTAYMQLNSLTSEDSAVYFCKR
67 - 98 32
CDR-H3
SYYGSSYVDY
99 - 108 10
HFR4
WGQGTTLTVSS
109 - 119 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSG
LYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
120 - 216 97
216
Region Sequence Fragment Residues Length
HFR1
EVQLQESGTELVKPGASVKISCKASGYIS
1 - 29 29
CDR-H1
TDHAIH
30 - 35 6
HFR2
WVKQRPEQGLE
36 - 46 11
CDR-H2
WIGYISPGNGDIK
47 - 59 13
HFR3
YNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFC
60 - 96 37
CDR-H3
KRSYYGSSYVD
97 - 107 11
HFR4
YWGQGTTLTVSS
108 - 119 12
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSG
LYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
120 - 216 97
216
Region Sequence Fragment Residues Length
HFR1
EVQLQESGTELVKPGASVKISCKAS
1 - 25 25
CDR-H1
GYISTDHA
26 - 33 8
HFR2
IHWVKQRPEQGLEWIGY
34 - 50 17
CDR-H2
ISPGNGDI
51 - 58 8
HFR3
KYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFC
59 - 96 38
CDR-H3
KRSYYGSSYVDY
97 - 108 12
HFR4
WGQGTTLTVSS
109 - 119 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSG
LYTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL
120 - 216 97
216
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVQLQESGTELVKPGASVKISCKAS-----
1 - 25 25
AbM
EVQLQESGTELVKPGASVKISCKAS-----
1 - 25 25
Kabat
EVQLQESGTELVKPGASVKISCKASGYIST
1 - 30 30
Contact
EVQLQESGTELVKPGASVKISCKASGYIS-
1 - 29 29
IMGT
EVQLQESGTELVKPGASVKISCKAS-----
1 - 25 25
CDR-H1 Chothia
GYISTDH---
26 - 32 7
AbM
GYISTDHAIH
26 - 35 10
Kabat
-----DHAIH
31 - 35 5
Contact
----TDHAIH
30 - 35 6
IMGT
GYISTDHA--
26 - 33 8
HFR2 Chothia
AIHWVKQRPEQGLEWIGYI
33 - 51 19
AbM
---WVKQRPEQGLEWIG--
36 - 49 14
Kabat
---WVKQRPEQGLEWIG--
36 - 49 14
Contact
---WVKQRPEQGLE-----
36 - 46 11
IMGT
-IHWVKQRPEQGLEWIGY-
34 - 50 17
CDR-H2 Chothia
-----SPGNGD---------
52 - 57 6
AbM
---YISPGNGDIK-------
50 - 59 10
Kabat
---YISPGNGDIKYNEKFKV
50 - 66 17
Contact
WIGYISPGNGDIK-------
47 - 59 13
IMGT
----ISPGNGDI--------
51 - 58 8
HFR3 Chothia
IKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR
58 - 98 41
AbM
--YNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR
60 - 98 39
Kabat
---------KATLTADQSSSTAYMQLNSLTSEDSAVYFCKR
67 - 98 32
Contact
--YNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFC--
60 - 96 37
IMGT
-KYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFC--
59 - 96 38
CDR-H3 Chothia
--SYYGSSYVDY
99 - 108 10
AbM
--SYYGSSYVDY
99 - 108 10
Kabat
--SYYGSSYVDY
99 - 108 10
Contact
KRSYYGSSYVD-
97 - 107 11
IMGT
KRSYYGSSYVDY
97 - 108 12
HFR4 Chothia
-WGQGTTLTVSS
109 - 119 11
AbM
-WGQGTTLTVSS
109 - 119 11
Kabat
-WGQGTTLTVSS
109 - 119 11
Contact
YWGQGTTLTVSS
108 - 119 12
IMGT
-WGQGTTLTVSS
109 - 119 11
Humanness

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Accession & Annotations
Accession 1eap_B
Source PDB  1eap  Submitted 10-AUG-1994  Updated 24-FEB-2009
Name
CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE
Organism
Mus musculus
Chain Type Heavy
Pairing 1eap_A
Identical Protein Sequences None
References
ZHOU W., GUO J., HUANG W., SCANLAN S., FLETTERICK J.
'CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE.'
SCIENCE V. 265 1059 1994 ISSN 0036-8075
Sequences
Amino Acid Sequence:
EVQLQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKY
NEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVYFCKRSYYGSSYVDYWGQGTTLTVSSA
KTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGLSSSVHTFPALLQSGL
YTMSSSVTVPGGGWPSATVTCSVAHPASSTTVDKKL

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1eap_B
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1eap_A
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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