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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVQLVESGGGLVQPGRSLRLSCAAS
1 - 25 25
CDR-H1
GFTFNDY
26 - 32 7
HFR2
AMHWVRQAPGKGLEWVSGI
33 - 51 19
CDR-H2
SWDSSS
52 - 57 6
HFR3
IGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK
58 - 98 41
CDR-H3
GRDYYDSGGYFTVAFDI
99 - 115 17
HFR4
WGQGTMVTVSS
116 - 126 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
127 - 229 103
229
Region Sequence Fragment Residues Length
HFR1
EVQLVESGGGLVQPGRSLRLSCAAS
1 - 25 25
CDR-H1
GFTFNDYAMH
26 - 35 10
HFR2
WVRQAPGKGLEWVS
36 - 49 14
CDR-H2
GISWDSSSIG
50 - 59 10
HFR3
YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK
60 - 98 39
CDR-H3
GRDYYDSGGYFTVAFDI
99 - 115 17
HFR4
WGQGTMVTVSS
116 - 126 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
127 - 229 103
229
Region Sequence Fragment Residues Length
HFR1
EVQLVESGGGLVQPGRSLRLSCAASGFTFN
1 - 30 30
CDR-H1
DYAMH
31 - 35 5
HFR2
WVRQAPGKGLEWVS
36 - 49 14
CDR-H2
GISWDSSSIGYADSVKG
50 - 66 17
HFR3
RFTISRDNAKNSLYLQMNSLRAEDMALYYCVK
67 - 98 32
CDR-H3
GRDYYDSGGYFTVAFDI
99 - 115 17
HFR4
WGQGTMVTVSS
116 - 126 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
127 - 229 103
229
Region Sequence Fragment Residues Length
HFR1
EVQLVESGGGLVQPGRSLRLSCAASGFTF
1 - 29 29
CDR-H1
NDYAMH
30 - 35 6
HFR2
WVRQAPGKGLE
36 - 46 11
CDR-H2
WVSGISWDSSSIG
47 - 59 13
HFR3
YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYC
60 - 96 37
CDR-H3
VKGRDYYDSGGYFTVAFD
97 - 114 18
HFR4
IWGQGTMVTVSS
115 - 126 12
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
127 - 229 103
229
Region Sequence Fragment Residues Length
HFR1
EVQLVESGGGLVQPGRSLRLSCAAS
1 - 25 25
CDR-H1
GFTFNDYA
26 - 33 8
HFR2
MHWVRQAPGKGLEWVSG
34 - 50 17
CDR-H2
ISWDSSSI
51 - 58 8
HFR3
GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYC
59 - 96 38
CDR-H3
VKGRDYYDSGGYFTVAFDI
97 - 115 19
HFR4
WGQGTMVTVSS
116 - 126 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
127 - 229 103
229
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVQLVESGGGLVQPGRSLRLSCAAS-----
1 - 25 25
AbM
EVQLVESGGGLVQPGRSLRLSCAAS-----
1 - 25 25
Kabat
EVQLVESGGGLVQPGRSLRLSCAASGFTFN
1 - 30 30
Contact
EVQLVESGGGLVQPGRSLRLSCAASGFTF-
1 - 29 29
IMGT
EVQLVESGGGLVQPGRSLRLSCAAS-----
1 - 25 25
CDR-H1 Chothia
GFTFNDY---
26 - 32 7
AbM
GFTFNDYAMH
26 - 35 10
Kabat
-----DYAMH
31 - 35 5
Contact
----NDYAMH
30 - 35 6
IMGT
GFTFNDYA--
26 - 33 8
HFR2 Chothia
AMHWVRQAPGKGLEWVSGI
33 - 51 19
AbM
---WVRQAPGKGLEWVS--
36 - 49 14
Kabat
---WVRQAPGKGLEWVS--
36 - 49 14
Contact
---WVRQAPGKGLE-----
36 - 46 11
IMGT
-MHWVRQAPGKGLEWVSG-
34 - 50 17
CDR-H2 Chothia
-----SWDSSS---------
52 - 57 6
AbM
---GISWDSSSIG-------
50 - 59 10
Kabat
---GISWDSSSIGYADSVKG
50 - 66 17
Contact
WVSGISWDSSSIG-------
47 - 59 13
IMGT
----ISWDSSSI--------
51 - 58 8
HFR3 Chothia
IGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK
58 - 98 41
AbM
--YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVK
60 - 98 39
Kabat
---------RFTISRDNAKNSLYLQMNSLRAEDMALYYCVK
67 - 98 32
Contact
--YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYC--
60 - 96 37
IMGT
-GYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYC--
59 - 96 38
CDR-H3 Chothia
--GRDYYDSGGYFTVAFDI
99 - 115 17
AbM
--GRDYYDSGGYFTVAFDI
99 - 115 17
Kabat
--GRDYYDSGGYFTVAFDI
99 - 115 17
Contact
VKGRDYYDSGGYFTVAFD-
97 - 114 18
IMGT
VKGRDYYDSGGYFTVAFDI
97 - 115 19
HFR4 Chothia
-WGQGTMVTVSS
116 - 126 11
AbM
-WGQGTMVTVSS
116 - 126 11
Kabat
-WGQGTMVTVSS
116 - 126 11
Contact
IWGQGTMVTVSS
115 - 126 12
IMGT
-WGQGTMVTVSS
116 - 126 11
Humanness

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Accession & Annotations
Accession 1dfb_H
Source PDB  1dfb  Submitted 27-MAR-1992  Updated 25-AUG-2009
Name
STRUCTURE OF A HUMAN MONOCLONAL ANTIBODY FAB FRAGMENT AGAINST GP41 OF HUMAN IMMUNODEFICIENCY VIRUS TYPE I
Organism
Homo sapiens
Human Subgroup Heavy chain subgroup III
Chain Type Heavy
Pairing 1dfb_L
Identical Protein Sequences None
References
HE M., RUKER F., CASALE E., CARTER C.
'STRUCTURE OF A HUMAN MONOCLONAL ANTIBODY FAB FRAGMENT AGAINST GP41 OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.'
PROC.NATL.ACAD.SCI.USA V. 89 7154 1992 ISSN 0027-8424
Sequences
Amino Acid Sequence:
EVQLVESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGY
ADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGRDYYDSGGYFTVAFDIWGQGT
MVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP
AVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
1dfb_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1dfb_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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