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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
QIQLVQSGPELKTPGETVRISCKAS
1 - 25 25
CDR-H1
GYTFTTY
26 - 32 7
HFR2
GMSWVKQTPGKGFKWMGWI
33 - 51 19
CDR-H2
NTYSGV
52 - 57 6
HFR3
PTYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCAR
58 - 98 41
CDR-H3
RSWYFDV
99 - 105 7
HFR4
WGTGTTVTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS
SVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
117 - 210 94
210
Region Sequence Fragment Residues Length
HFR1
QIQLVQSGPELKTPGETVRISCKAS
1 - 25 25
CDR-H1
GYTFTTYGMS
26 - 35 10
HFR2
WVKQTPGKGFKWMG
36 - 49 14
CDR-H2
WINTYSGVPT
50 - 59 10
HFR3
YADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCAR
60 - 98 39
CDR-H3
RSWYFDV
99 - 105 7
HFR4
WGTGTTVTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS
SVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
117 - 210 94
210
Region Sequence Fragment Residues Length
HFR1
QIQLVQSGPELKTPGETVRISCKASGYTFT
1 - 30 30
CDR-H1
TYGMS
31 - 35 5
HFR2
WVKQTPGKGFKWMG
36 - 49 14
CDR-H2
WINTYSGVPTYADDFKG
50 - 66 17
HFR3
RFAFSLETSASTAYLQINNLKNEDTATYFCAR
67 - 98 32
CDR-H3
RSWYFDV
99 - 105 7
HFR4
WGTGTTVTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS
SVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
117 - 210 94
210
Region Sequence Fragment Residues Length
HFR1
QIQLVQSGPELKTPGETVRISCKASGYTF
1 - 29 29
CDR-H1
TTYGMS
30 - 35 6
HFR2
WVKQTPGKGFK
36 - 46 11
CDR-H2
WMGWINTYSGVPT
47 - 59 13
HFR3
YADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFC
60 - 96 37
CDR-H3
ARRSWYFD
97 - 104 8
HFR4
VWGTGTTVTVSS
105 - 116 12
Tail
AKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS
SVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
117 - 210 94
210
Region Sequence Fragment Residues Length
HFR1
QIQLVQSGPELKTPGETVRISCKAS
1 - 25 25
CDR-H1
GYTFTTYG
26 - 33 8
HFR2
MSWVKQTPGKGFKWMGW
34 - 50 17
CDR-H2
INTYSGVP
51 - 58 8
HFR3
TYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFC
59 - 96 38
CDR-H3
ARRSWYFDV
97 - 105 9
HFR4
WGTGTTVTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS
SVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
117 - 210 94
210
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
QIQLVQSGPELKTPGETVRISCKAS-----
1 - 25 25
AbM
QIQLVQSGPELKTPGETVRISCKAS-----
1 - 25 25
Kabat
QIQLVQSGPELKTPGETVRISCKASGYTFT
1 - 30 30
Contact
QIQLVQSGPELKTPGETVRISCKASGYTF-
1 - 29 29
IMGT
QIQLVQSGPELKTPGETVRISCKAS-----
1 - 25 25
CDR-H1 Chothia
GYTFTTY---
26 - 32 7
AbM
GYTFTTYGMS
26 - 35 10
Kabat
-----TYGMS
31 - 35 5
Contact
----TTYGMS
30 - 35 6
IMGT
GYTFTTYG--
26 - 33 8
HFR2 Chothia
GMSWVKQTPGKGFKWMGWI
33 - 51 19
AbM
---WVKQTPGKGFKWMG--
36 - 49 14
Kabat
---WVKQTPGKGFKWMG--
36 - 49 14
Contact
---WVKQTPGKGFK-----
36 - 46 11
IMGT
-MSWVKQTPGKGFKWMGW-
34 - 50 17
CDR-H2 Chothia
-----NTYSGV---------
52 - 57 6
AbM
---WINTYSGVPT-------
50 - 59 10
Kabat
---WINTYSGVPTYADDFKG
50 - 66 17
Contact
WMGWINTYSGVPT-------
47 - 59 13
IMGT
----INTYSGVP--------
51 - 58 8
HFR3 Chothia
PTYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCAR
58 - 98 41
AbM
--YADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCAR
60 - 98 39
Kabat
---------RFAFSLETSASTAYLQINNLKNEDTATYFCAR
67 - 98 32
Contact
--YADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFC--
60 - 96 37
IMGT
-TYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFC--
59 - 96 38
CDR-H3 Chothia
--RSWYFDV
99 - 105 7
AbM
--RSWYFDV
99 - 105 7
Kabat
--RSWYFDV
99 - 105 7
Contact
ARRSWYFD-
97 - 104 8
IMGT
ARRSWYFDV
97 - 105 9
HFR4 Chothia
-WGTGTTVTVSS
106 - 116 11
AbM
-WGTGTTVTVSS
106 - 116 11
Kabat
-WGTGTTVTVSS
106 - 116 11
Contact
VWGTGTTVTVSS
105 - 116 12
IMGT
-WGTGTTVTVSS
106 - 116 11
Humanness

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Accession & Annotations
Accession 1tet_H
Source PDB  1tet  Submitted 21-JUN-1993  Updated 24-FEB-2009
Name
CRYSTAL STRUCTURE OF AN ANTICHOLERA TOXIN PEPTIDE COMPLEX AT 2.3 ANGSTROMS
Organism
Mus musculus
Chain Type Heavy
Pairing 1tet_L
Identical Protein Sequences None
References
SHOHAM M.
'CRYSTAL STRUCTURE OF AN ANTICHOLERA TOXIN PEPTIDE COMPLEX AT 2.3 A.'
J.MOL.BIOL. V. 232 1169 1993 ISSN 0022-2836
Sequences
Amino Acid Sequence:
QIQLVQSGPELKTPGETVRISCKASGYTFTTYGMSWVKQTPGKGFKWMGWINTYSGVPTY
ADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCARRSWYFDVWGTGTTVTVSSAKTT
PPSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV
PSSPRPSETVTCNVAHPASSTKVDKKIVPR

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1tet_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1tet_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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