abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
QVKLQESGPAVIKPSQSLSLTCIVS
1 - 25 25
CDR-H1
GFSITRTNY
26 - 34 9
HFR2
CWHWIRQAPGKGLEWMGRI
35 - 53 19
CDR-H2
CYEGS
54 - 58 5
HFR3
IYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR
59 - 99 41
CDR-H3
ENHMYETYFDV
100 - 110 11
HFR4
WGQGTTVTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
122 - 221 100
221
Region Sequence Fragment Residues Length
HFR1
QVKLQESGPAVIKPSQSLSLTCIVS
1 - 25 25
CDR-H1
GFSITRTNYCWH
26 - 37 12
HFR2
WIRQAPGKGLEWMG
38 - 51 14
CDR-H2
RICYEGSIY
52 - 60 9
HFR3
YSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR
61 - 99 39
CDR-H3
ENHMYETYFDV
100 - 110 11
HFR4
WGQGTTVTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
122 - 221 100
221
Region Sequence Fragment Residues Length
HFR1
QVKLQESGPAVIKPSQSLSLTCIVSGFSIT
1 - 30 30
CDR-H1
RTNYCWH
31 - 37 7
HFR2
WIRQAPGKGLEWMG
38 - 51 14
CDR-H2
RICYEGSIYYSPSIKS
52 - 67 16
HFR3
RSTISRDTSLNKFFIQLISVTNEDTAMYYCSR
68 - 99 32
CDR-H3
ENHMYETYFDV
100 - 110 11
HFR4
WGQGTTVTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
122 - 221 100
221
Region Sequence Fragment Residues Length
HFR1
QVKLQESGPAVIKPSQSLSLTCIVSGFSI
1 - 29 29
CDR-H1
TRTNYCWH
30 - 37 8
HFR2
WIRQAPGKGLE
38 - 48 11
CDR-H2
WMGRICYEGSIY
49 - 60 12
HFR3
YSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYC
61 - 97 37
CDR-H3
SRENHMYETYFD
98 - 109 12
HFR4
VWGQGTTVTVSS
110 - 121 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
122 - 221 100
221
Region Sequence Fragment Residues Length
HFR1
QVKLQESGPAVIKPSQSLSLTCIVS
1 - 25 25
CDR-H1
GFSITRTNYC
26 - 35 10
HFR2
WHWIRQAPGKGLEWMGR
36 - 52 17
CDR-H2
ICYEGSI
53 - 59 7
HFR3
YYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYC
60 - 97 38
CDR-H3
SRENHMYETYFDV
98 - 110 13
HFR4
WGQGTTVTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
122 - 221 100
221
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
QVKLQESGPAVIKPSQSLSLTCIVS-----
1 - 25 25
AbM
QVKLQESGPAVIKPSQSLSLTCIVS-----
1 - 25 25
Kabat
QVKLQESGPAVIKPSQSLSLTCIVSGFSIT
1 - 30 30
Contact
QVKLQESGPAVIKPSQSLSLTCIVSGFSI-
1 - 29 29
IMGT
QVKLQESGPAVIKPSQSLSLTCIVS-----
1 - 25 25
CDR-H1 Chothia
GFSITRTNY---
26 - 34 9
AbM
GFSITRTNYCWH
26 - 37 12
Kabat
-----RTNYCWH
31 - 37 7
Contact
----TRTNYCWH
30 - 37 8
IMGT
GFSITRTNYC--
26 - 35 10
HFR2 Chothia
CWHWIRQAPGKGLEWMGRI
35 - 53 19
AbM
---WIRQAPGKGLEWMG--
38 - 51 14
Kabat
---WIRQAPGKGLEWMG--
38 - 51 14
Contact
---WIRQAPGKGLE-----
38 - 48 11
IMGT
-WHWIRQAPGKGLEWMGR-
36 - 52 17
CDR-H2 Chothia
-----CYEGS---------
54 - 58 5
AbM
---RICYEGSIY-------
52 - 60 9
Kabat
---RICYEGSIYYSPSIKS
52 - 67 16
Contact
WMGRICYEGSIY-------
49 - 60 12
IMGT
----ICYEGSI--------
53 - 59 7
HFR3 Chothia
IYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR
59 - 99 41
AbM
--YSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSR
61 - 99 39
Kabat
---------RSTISRDTSLNKFFIQLISVTNEDTAMYYCSR
68 - 99 32
Contact
--YSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYC--
61 - 97 37
IMGT
-YYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYC--
60 - 97 38
CDR-H3 Chothia
--ENHMYETYFDV
100 - 110 11
AbM
--ENHMYETYFDV
100 - 110 11
Kabat
--ENHMYETYFDV
100 - 110 11
Contact
SRENHMYETYFD-
98 - 109 12
IMGT
SRENHMYETYFDV
98 - 110 13
HFR4 Chothia
-WGQGTTVTVSS
111 - 121 11
AbM
-WGQGTTVTVSS
111 - 121 11
Kabat
-WGQGTTVTVSS
111 - 121 11
Contact
VWGQGTTVTVSS
110 - 121 12
IMGT
-WGQGTTVTVSS
111 - 121 11
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 1acy_H
Source PDB  1acy  Submitted 10-FEB-1994  Updated 24-FEB-2009
Name
CRYSTAL STRUCTURE OF THE PRINCIPAL NEUTRALIZING SITE OF HIV- 1
Organism
Mus musculus
Chain Type Heavy
Pairing 1acy_L
Identical Protein Sequences PDB: 1ai1_H
References
GHIARA B., STURA A., STANFIELD L., PROFY T., WILSON A.
'CRYSTAL STRUCTURE OF THE PRINCIPAL NEUTRALIZATION SITE OF HIV-1.'
SCIENCE V. 264 82 1994 ISSN 0036-8075
Sequences
Amino Acid Sequence:
QVKLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIY
YSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRENHMYETYFDVWGQGTTVTVS
SAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQS
DLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
1acy_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1acy_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual