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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIVLTQSPATLSVTPGNSVSLSC
1 - 23 23
CDR-L1
RASQSIGNNLH
24 - 34 11
LFR2
WYQQKSHESPRLLIK
35 - 49 15
CDR-L2
YASQSIS
50 - 56 7
LFR3
GIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
57 - 88 32
CDR-L3
QQSNSWPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIVLTQSPATLSVTPGNSVSLSC
1 - 23 23
CDR-L1
RASQSIGNNLH
24 - 34 11
LFR2
WYQQKSHESPRLLIK
35 - 49 15
CDR-L2
YASQSIS
50 - 56 7
LFR3
GIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
57 - 88 32
CDR-L3
QQSNSWPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIVLTQSPATLSVTPGNSVSLSC
1 - 23 23
CDR-L1
RASQSIGNNLH
24 - 34 11
LFR2
WYQQKSHESPRLLIK
35 - 49 15
CDR-L2
YASQSIS
50 - 56 7
LFR3
GIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
57 - 88 32
CDR-L3
QQSNSWPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIVLTQSPATLSVTPGNSVSLSCRASQSI
1 - 29 29
CDR-L1
GNNLHWY
30 - 36 7
LFR2
QQKSHESPR
37 - 45 9
CDR-L2
LLIKYASQSI
46 - 55 10
LFR3
SGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
56 - 88 33
CDR-L3
QQSNSWPY
89 - 96 8
LFR4
TFGGGTKLEIKRA
97 - 109 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIVLTQSPATLSVTPGNSVSLSCRAS
1 - 26 26
CDR-L1
QSIGNN
27 - 32 6
LFR2
LHWYQQKSHESPRLLIK
33 - 49 17
CDR-L2
YA
50 - 51 2
LFR3
SQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
52 - 88 37
CDR-L3
QQSNSWPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIVLTQSPATLSVTPGNSVSLSC------
1 - 23 23
AbM
DIVLTQSPATLSVTPGNSVSLSC------
1 - 23 23
Kabat
DIVLTQSPATLSVTPGNSVSLSC------
1 - 23 23
Contact
DIVLTQSPATLSVTPGNSVSLSCRASQSI
1 - 29 29
IMGT
DIVLTQSPATLSVTPGNSVSLSCRAS---
1 - 26 26
CDR-L1 Chothia
RASQSIGNNLH--
24 - 34 11
AbM
RASQSIGNNLH--
24 - 34 11
Kabat
RASQSIGNNLH--
24 - 34 11
Contact
------GNNLHWY
30 - 36 7
IMGT
---QSIGNN----
27 - 32 6
LFR2 Chothia
--WYQQKSHESPRLLIK
35 - 49 15
AbM
--WYQQKSHESPRLLIK
35 - 49 15
Kabat
--WYQQKSHESPRLLIK
35 - 49 15
Contact
----QQKSHESPR----
37 - 45 9
IMGT
LHWYQQKSHESPRLLIK
33 - 49 17
CDR-L2 Chothia
----YASQSIS
50 - 56 7
AbM
----YASQSIS
50 - 56 7
Kabat
----YASQSIS
50 - 56 7
Contact
LLIKYASQSI-
46 - 55 10
IMGT
----YA-----
50 - 51 2
LFR3 Chothia
-----GIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
57 - 88 32
AbM
-----GIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
57 - 88 32
Kabat
-----GIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
57 - 88 32
Contact
----SGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
56 - 88 33
IMGT
SQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC
52 - 88 37
CDR-L3 Chothia
QQSNSWPYT
89 - 97 9
AbM
QQSNSWPYT
89 - 97 9
Kabat
QQSNSWPYT
89 - 97 9
Contact
QQSNSWPY-
89 - 96 8
IMGT
QQSNSWPYT
89 - 97 9
LFR4 Chothia
-FGGGTKLEIKRA
98 - 109 12
AbM
-FGGGTKLEIKRA
98 - 109 12
Kabat
-FGGGTKLEIKRA
98 - 109 12
Contact
TFGGGTKLEIKRA
97 - 109 13
IMGT
-FGGGTKLEIKRA
98 - 109 12
Humanness

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Accession & Annotations
Accession 3hfm_L
Source PDB  3hfm  Submitted 11-AUG-1988  Updated 24-FEB-2009
Name
STRUCTURE OF AN ANTIBODY-ANTIGEN COMPLEX. CRYSTAL STRUCTURE OF THE HY/HEL-10 FAB-LYSOZYME COMPLEX
Organism
Mus musculus
Chain Type Light
Pairing 3hfm_H
Identical Protein Sequences PDB: 6p4a_L 6p4b_A 6p4b_L 6p4c_L
References
PADLAN A., SILVERTON W., SHERIFF S., COHEN H., SMITH-GILL J., DAVIES R.
'STRUCTURE OF AN ANTIBODY-ANTIGEN COMPLEX: CRYSTAL STRUCTURE OF THE HYHEL-10 FAB-LYSOZYME COMPLEX.'
PROC.NATL.ACAD.SCI.USA V. 86 5938 1989 ISSN 0027-8424
Sequences
Amino Acid Sequence:
DIVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPS
RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP
SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLT
LTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
3hfm_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
3hfm_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
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White

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