abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
QVQLKESGPGLVAPSQSLSITCTVS
1 - 25 25
CDR-H1
GFLLISN
26 - 32 7
HFR2
GVHWVRQPPGKGLEWLGVI
33 - 51 19
CDR-H2
WAGGN
52 - 56 5
HFR3
TNYNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCAR
57 - 97 41
CDR-H3
DFYDYDVFYYAMDY
98 - 111 14
HFR4
WGQGTSVTVSS
112 - 122 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
123 - 221 99
221
Region Sequence Fragment Residues Length
HFR1
QVQLKESGPGLVAPSQSLSITCTVS
1 - 25 25
CDR-H1
GFLLISNGVH
26 - 35 10
HFR2
WVRQPPGKGLEWLG
36 - 49 14
CDR-H2
VIWAGGNTN
50 - 58 9
HFR3
YNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCAR
59 - 97 39
CDR-H3
DFYDYDVFYYAMDY
98 - 111 14
HFR4
WGQGTSVTVSS
112 - 122 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
123 - 221 99
221
Region Sequence Fragment Residues Length
HFR1
QVQLKESGPGLVAPSQSLSITCTVSGFLLI
1 - 30 30
CDR-H1
SNGVH
31 - 35 5
HFR2
WVRQPPGKGLEWLG
36 - 49 14
CDR-H2
VIWAGGNTNYNSALMS
50 - 65 16
HFR3
RVSISKDNSKSQVFLKMKSLQTDDTAMYYCAR
66 - 97 32
CDR-H3
DFYDYDVFYYAMDY
98 - 111 14
HFR4
WGQGTSVTVSS
112 - 122 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
123 - 221 99
221
Region Sequence Fragment Residues Length
HFR1
QVQLKESGPGLVAPSQSLSITCTVSGFLL
1 - 29 29
CDR-H1
ISNGVH
30 - 35 6
HFR2
WVRQPPGKGLE
36 - 46 11
CDR-H2
WLGVIWAGGNTN
47 - 58 12
HFR3
YNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYC
59 - 95 37
CDR-H3
ARDFYDYDVFYYAMD
96 - 110 15
HFR4
YWGQGTSVTVSS
111 - 122 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
123 - 221 99
221
Region Sequence Fragment Residues Length
HFR1
QVQLKESGPGLVAPSQSLSITCTVS
1 - 25 25
CDR-H1
GFLLISNG
26 - 33 8
HFR2
VHWVRQPPGKGLEWLGV
34 - 50 17
CDR-H2
IWAGGNT
51 - 57 7
HFR3
NYNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYC
58 - 95 38
CDR-H3
ARDFYDYDVFYYAMDY
96 - 111 16
HFR4
WGQGTSVTVSS
112 - 122 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP
123 - 221 99
221
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
QVQLKESGPGLVAPSQSLSITCTVS-----
1 - 25 25
AbM
QVQLKESGPGLVAPSQSLSITCTVS-----
1 - 25 25
Kabat
QVQLKESGPGLVAPSQSLSITCTVSGFLLI
1 - 30 30
Contact
QVQLKESGPGLVAPSQSLSITCTVSGFLL-
1 - 29 29
IMGT
QVQLKESGPGLVAPSQSLSITCTVS-----
1 - 25 25
CDR-H1 Chothia
GFLLISN---
26 - 32 7
AbM
GFLLISNGVH
26 - 35 10
Kabat
-----SNGVH
31 - 35 5
Contact
----ISNGVH
30 - 35 6
IMGT
GFLLISNG--
26 - 33 8
HFR2 Chothia
GVHWVRQPPGKGLEWLGVI
33 - 51 19
AbM
---WVRQPPGKGLEWLG--
36 - 49 14
Kabat
---WVRQPPGKGLEWLG--
36 - 49 14
Contact
---WVRQPPGKGLE-----
36 - 46 11
IMGT
-VHWVRQPPGKGLEWLGV-
34 - 50 17
CDR-H2 Chothia
-----WAGGN---------
52 - 56 5
AbM
---VIWAGGNTN-------
50 - 58 9
Kabat
---VIWAGGNTNYNSALMS
50 - 65 16
Contact
WLGVIWAGGNTN-------
47 - 58 12
IMGT
----IWAGGNT--------
51 - 57 7
HFR3 Chothia
TNYNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCAR
57 - 97 41
AbM
--YNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCAR
59 - 97 39
Kabat
---------RVSISKDNSKSQVFLKMKSLQTDDTAMYYCAR
66 - 97 32
Contact
--YNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYC--
59 - 95 37
IMGT
-NYNSALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYC--
58 - 95 38
CDR-H3 Chothia
--DFYDYDVFYYAMDY
98 - 111 14
AbM
--DFYDYDVFYYAMDY
98 - 111 14
Kabat
--DFYDYDVFYYAMDY
98 - 111 14
Contact
ARDFYDYDVFYYAMD-
96 - 110 15
IMGT
ARDFYDYDVFYYAMDY
96 - 111 16
HFR4 Chothia
-WGQGTSVTVSS
112 - 122 11
AbM
-WGQGTSVTVSS
112 - 122 11
Kabat
-WGQGTSVTVSS
112 - 122 11
Contact
YWGQGTSVTVSS
111 - 122 12
IMGT
-WGQGTSVTVSS
112 - 122 11
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 1gig_H
Source PDB  1gig  Submitted 20-JAN-1993  Updated 25-AUG-2009
Name
REFINED THREE-DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A MURINE IGG1, LAMBDA ANTIBODY
Organism
Mus musculus
Chain Type Heavy
Pairing 1gig_L
Identical Protein Sequences PDB: 2vir_B 2vis_B 2vit_B 7jti_H
References
BIZEBARD T., DANIELS R., KAHN R., GOLINELLI-PIMPANEAU B., SKEHEL J., KNOSSOW M.
'REFINED THREE-DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A MURINE IGGL,LAMBDA ANTIBODY.'
ACTA CRYSTALLOGR.,SECT.D V. 50 768 1994 ISSN 0907-4449
Sequences
Amino Acid Sequence:
QVQLKESGPGLVAPSQSLSITCTVSGFLLISNGVHWVRQPPGKGLEWLGVIWAGGNTNYN
SALMSRVSISKDNSKSQVFLKMKSLQTDDTAMYYCARDFYDYDVFYYAMDYWGQGTSVTV
SSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ
SDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
1gig_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1gig_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual