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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIQMTQIPSSLSASLGDRVSISC
1 - 23 23
CDR-L1
RASQDINNFLN
24 - 34 11
LFR2
WYQQKPDGTIKLLIY
35 - 49 15
CDR-L2
FTSRSQS
50 - 56 7
LFR3
GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
CDR-L3
QQGNALPRT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQIPSSLSASLGDRVSISC
1 - 23 23
CDR-L1
RASQDINNFLN
24 - 34 11
LFR2
WYQQKPDGTIKLLIY
35 - 49 15
CDR-L2
FTSRSQS
50 - 56 7
LFR3
GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
CDR-L3
QQGNALPRT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQIPSSLSASLGDRVSISC
1 - 23 23
CDR-L1
RASQDINNFLN
24 - 34 11
LFR2
WYQQKPDGTIKLLIY
35 - 49 15
CDR-L2
FTSRSQS
50 - 56 7
LFR3
GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
CDR-L3
QQGNALPRT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQIPSSLSASLGDRVSISCRASQDI
1 - 29 29
CDR-L1
NNFLNWY
30 - 36 7
LFR2
QQKPDGTIK
37 - 45 9
CDR-L2
LLIYFTSRSQ
46 - 55 10
LFR3
SGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
56 - 88 33
CDR-L3
QQGNALPR
89 - 96 8
LFR4
TFGGGTKLEIKRA
97 - 109 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQIPSSLSASLGDRVSISCRAS
1 - 26 26
CDR-L1
QDINNF
27 - 32 6
LFR2
LNWYQQKPDGTIKLLIY
33 - 49 17
CDR-L2
FT
50 - 51 2
LFR3
SRSQSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
52 - 88 37
CDR-L3
QQGNALPRT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIQMTQIPSSLSASLGDRVSISC------
1 - 23 23
AbM
DIQMTQIPSSLSASLGDRVSISC------
1 - 23 23
Kabat
DIQMTQIPSSLSASLGDRVSISC------
1 - 23 23
Contact
DIQMTQIPSSLSASLGDRVSISCRASQDI
1 - 29 29
IMGT
DIQMTQIPSSLSASLGDRVSISCRAS---
1 - 26 26
CDR-L1 Chothia
RASQDINNFLN--
24 - 34 11
AbM
RASQDINNFLN--
24 - 34 11
Kabat
RASQDINNFLN--
24 - 34 11
Contact
------NNFLNWY
30 - 36 7
IMGT
---QDINNF----
27 - 32 6
LFR2 Chothia
--WYQQKPDGTIKLLIY
35 - 49 15
AbM
--WYQQKPDGTIKLLIY
35 - 49 15
Kabat
--WYQQKPDGTIKLLIY
35 - 49 15
Contact
----QQKPDGTIK----
37 - 45 9
IMGT
LNWYQQKPDGTIKLLIY
33 - 49 17
CDR-L2 Chothia
----FTSRSQS
50 - 56 7
AbM
----FTSRSQS
50 - 56 7
Kabat
----FTSRSQS
50 - 56 7
Contact
LLIYFTSRSQ-
46 - 55 10
IMGT
----FT-----
50 - 51 2
LFR3 Chothia
-----GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
AbM
-----GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
Kabat
-----GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
Contact
----SGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
56 - 88 33
IMGT
SRSQSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
52 - 88 37
CDR-L3 Chothia
QQGNALPRT
89 - 97 9
AbM
QQGNALPRT
89 - 97 9
Kabat
QQGNALPRT
89 - 97 9
Contact
QQGNALPR-
89 - 96 8
IMGT
QQGNALPRT
89 - 97 9
LFR4 Chothia
-FGGGTKLEIKRA
98 - 109 12
AbM
-FGGGTKLEIKRA
98 - 109 12
Kabat
-FGGGTKLEIKRA
98 - 109 12
Contact
TFGGGTKLEIKRA
97 - 109 13
IMGT
-FGGGTKLEIKRA
98 - 109 12
Humanness

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Accession & Annotations
Accession 6fab_L
Source PDB  6fab  Submitted 17-JAN-1991  Updated 25-AUG-2009
Name
THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P- AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN
Organism
Mus musculus
Chain Type Light
Pairing 6fab_H
Identical Protein Sequences None
References
STRONG K., CAMPBELL R., ROSE R., PETSKO A., SHARON J., MARGOLIES N.
'THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P-AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN.'
BIOCHEMISTRY V. 30 3739 1991 ISSN 0006-2960
Sequences
Amino Acid Sequence:
DIQMTQIPSSLSASLGDRVSISCRASQDINNFLNWYQQKPDGTIKLLIYFTSRSQSGVPS
RFSGSGSGTDYSLTISNLEQEDIATYFCQQGNALPRTFGGGTKLEIKRADAAPTVSIFPP
SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLT
LTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


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Chains
6fab_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
6fab_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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