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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTTGEKVTMTC
1 - 23 23
CDR-L1
KSSQSLLNSRTQKNYLT
24 - 40 17
LFR2
WYQQKPGQSPKLLIY
41 - 55 15
CDR-L2
WASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
63 - 94 32
CDR-L3
QNNYNYPLT
95 - 103 9
LFR4
FGAGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTTGEKVTMTC
1 - 23 23
CDR-L1
KSSQSLLNSRTQKNYLT
24 - 40 17
LFR2
WYQQKPGQSPKLLIY
41 - 55 15
CDR-L2
WASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
63 - 94 32
CDR-L3
QNNYNYPLT
95 - 103 9
LFR4
FGAGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTTGEKVTMTC
1 - 23 23
CDR-L1
KSSQSLLNSRTQKNYLT
24 - 40 17
LFR2
WYQQKPGQSPKLLIY
41 - 55 15
CDR-L2
WASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
63 - 94 32
CDR-L3
QNNYNYPLT
95 - 103 9
LFR4
FGAGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTTGEKVTMTCKSSQSL
1 - 29 29
CDR-L1
LNSRTQKNYLTWY
30 - 42 13
LFR2
QQKPGQSPK
43 - 51 9
CDR-L2
LLIYWASTRE
52 - 61 10
LFR3
SGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
62 - 94 33
CDR-L3
QNNYNYPL
95 - 102 8
LFR4
TFGAGTKLELKRA
103 - 115 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTTGEKVTMTCKSS
1 - 26 26
CDR-L1
QSLLNSRTQKNY
27 - 38 12
LFR2
LTWYQQKPGQSPKLLIY
39 - 55 17
CDR-L2
WA
56 - 57 2
LFR3
STRESGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
58 - 94 37
CDR-L3
QNNYNYPLT
95 - 103 9
LFR4
FGAGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIVMTQSPSSLTVTTGEKVTMTC------
1 - 23 23
AbM
DIVMTQSPSSLTVTTGEKVTMTC------
1 - 23 23
Kabat
DIVMTQSPSSLTVTTGEKVTMTC------
1 - 23 23
Contact
DIVMTQSPSSLTVTTGEKVTMTCKSSQSL
1 - 29 29
IMGT
DIVMTQSPSSLTVTTGEKVTMTCKSS---
1 - 26 26
CDR-L1 Chothia
KSSQSLLNSRTQKNYLT--
24 - 40 17
AbM
KSSQSLLNSRTQKNYLT--
24 - 40 17
Kabat
KSSQSLLNSRTQKNYLT--
24 - 40 17
Contact
------LNSRTQKNYLTWY
30 - 42 13
IMGT
---QSLLNSRTQKNY----
27 - 38 12
LFR2 Chothia
--WYQQKPGQSPKLLIY
41 - 55 15
AbM
--WYQQKPGQSPKLLIY
41 - 55 15
Kabat
--WYQQKPGQSPKLLIY
41 - 55 15
Contact
----QQKPGQSPK----
43 - 51 9
IMGT
LTWYQQKPGQSPKLLIY
39 - 55 17
CDR-L2 Chothia
----WASTRES
56 - 62 7
AbM
----WASTRES
56 - 62 7
Kabat
----WASTRES
56 - 62 7
Contact
LLIYWASTRE-
52 - 61 10
IMGT
----WA-----
56 - 57 2
LFR3 Chothia
-----GVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
63 - 94 32
AbM
-----GVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
63 - 94 32
Kabat
-----GVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
63 - 94 32
Contact
----SGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
62 - 94 33
IMGT
STRESGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYC
58 - 94 37
CDR-L3 Chothia
QNNYNYPLT
95 - 103 9
AbM
QNNYNYPLT
95 - 103 9
Kabat
QNNYNYPLT
95 - 103 9
Contact
QNNYNYPL-
95 - 102 8
IMGT
QNNYNYPLT
95 - 103 9
LFR4 Chothia
-FGAGTKLELKRA
104 - 115 12
AbM
-FGAGTKLELKRA
104 - 115 12
Kabat
-FGAGTKLELKRA
104 - 115 12
Contact
TFGAGTKLELKRA
103 - 115 13
IMGT
-FGAGTKLELKRA
104 - 115 12
Humanness

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Accession & Annotations
Accession 1bbd_L
Source PDB  1bbd  Submitted 05-MAY-1992  Updated 05-FEB-2014
Name
THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2
Organism
Mus musculus
Chain Type Light
Pairing 1bbd_H
Identical Protein Sequences PDB: 1a3r_L
References
TORMO J., STADLER E., SKERN T., AUER H., KANZLER O., BETZEL C., BLAAS D., FITA I.
'THREE-DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2.'
PROTEIN SCI. V. 1 1154 1992 ISSN 0961-8368
Sequences
Amino Acid Sequence:
DIVMTQSPSSLTVTTGEKVTMTCKSSQSLLNSRTQKNYLTWYQQKPGQSPKLLIYWASTR
ESGVPDRFTGSGSGTDFTLSISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAPT
VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS
MSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1bbd_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1bbd_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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