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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
QAVVTQESALTTSPGETVTLTC
1 - 22 22
CDR-L1
RSSTGAVTTSNYAN
23 - 36 14
LFR2
WVQEKPDHLFTGLIG
37 - 51 15
CDR-L2
GTNNRAP
52 - 58 7
LFR3
GVPARFSGSLIGDKAALTITGAQTEDEAIYFC
59 - 90 32
CDR-L3
ALWYSNHWV
91 - 99 9
LFR4
FGGGTKLTVLGQP
100 - 112 13
Tail
KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSN
NKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
113 - 210 98
210
Region Sequence Fragment Residues Length
LFR1
QAVVTQESALTTSPGETVTLTC
1 - 22 22
CDR-L1
RSSTGAVTTSNYAN
23 - 36 14
LFR2
WVQEKPDHLFTGLIG
37 - 51 15
CDR-L2
GTNNRAP
52 - 58 7
LFR3
GVPARFSGSLIGDKAALTITGAQTEDEAIYFC
59 - 90 32
CDR-L3
ALWYSNHWV
91 - 99 9
LFR4
FGGGTKLTVLGQP
100 - 112 13
Tail
KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSN
NKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
113 - 210 98
210
Region Sequence Fragment Residues Length
LFR1
QAVVTQESALTTSPGETVTLTC
1 - 22 22
CDR-L1
RSSTGAVTTSNYAN
23 - 36 14
LFR2
WVQEKPDHLFTGLIG
37 - 51 15
CDR-L2
GTNNRAP
52 - 58 7
LFR3
GVPARFSGSLIGDKAALTITGAQTEDEAIYFC
59 - 90 32
CDR-L3
ALWYSNHWV
91 - 99 9
LFR4
FGGGTKLTVLGQP
100 - 112 13
Tail
KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSN
NKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
113 - 210 98
210
Region Sequence Fragment Residues Length
LFR1
QAVVTQESALTTSPGETVTLTCRSSTGA
1 - 28 28
CDR-L1
VTTSNYANWV
29 - 38 10
LFR2
QEKPDHLFT
39 - 47 9
CDR-L2
GLIGGTNNRA
48 - 57 10
LFR3
PGVPARFSGSLIGDKAALTITGAQTEDEAIYFC
58 - 90 33
CDR-L3
ALWYSNHW
91 - 98 8
LFR4
VFGGGTKLTVLGQP
99 - 112 14
Tail
KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSN
NKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
113 - 210 98
210
Region Sequence Fragment Residues Length
LFR1
QAVVTQESALTTSPGETVTLTCRSS
1 - 25 25
CDR-L1
TGAVTTSNY
26 - 34 9
LFR2
ANWVQEKPDHLFTGLIG
35 - 51 17
CDR-L2
GT
52 - 53 2
LFR3
NNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFC
54 - 90 37
CDR-L3
ALWYSNHWV
91 - 99 9
LFR4
FGGGTKLTVLGQP
100 - 112 13
Tail
KSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSN
NKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLS
113 - 210 98
210
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
QAVVTQESALTTSPGETVTLTC------
1 - 22 22
AbM
QAVVTQESALTTSPGETVTLTC------
1 - 22 22
Kabat
QAVVTQESALTTSPGETVTLTC------
1 - 22 22
Contact
QAVVTQESALTTSPGETVTLTCRSSTGA
1 - 28 28
IMGT
QAVVTQESALTTSPGETVTLTCRSS---
1 - 25 25
CDR-L1 Chothia
RSSTGAVTTSNYAN--
23 - 36 14
AbM
RSSTGAVTTSNYAN--
23 - 36 14
Kabat
RSSTGAVTTSNYAN--
23 - 36 14
Contact
------VTTSNYANWV
29 - 38 10
IMGT
---TGAVTTSNY----
26 - 34 9
LFR2 Chothia
--WVQEKPDHLFTGLIG
37 - 51 15
AbM
--WVQEKPDHLFTGLIG
37 - 51 15
Kabat
--WVQEKPDHLFTGLIG
37 - 51 15
Contact
----QEKPDHLFT----
39 - 47 9
IMGT
ANWVQEKPDHLFTGLIG
35 - 51 17
CDR-L2 Chothia
----GTNNRAP
52 - 58 7
AbM
----GTNNRAP
52 - 58 7
Kabat
----GTNNRAP
52 - 58 7
Contact
GLIGGTNNRA-
48 - 57 10
IMGT
----GT-----
52 - 53 2
LFR3 Chothia
-----GVPARFSGSLIGDKAALTITGAQTEDEAIYFC
59 - 90 32
AbM
-----GVPARFSGSLIGDKAALTITGAQTEDEAIYFC
59 - 90 32
Kabat
-----GVPARFSGSLIGDKAALTITGAQTEDEAIYFC
59 - 90 32
Contact
----PGVPARFSGSLIGDKAALTITGAQTEDEAIYFC
58 - 90 33
IMGT
NNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFC
54 - 90 37
CDR-L3 Chothia
ALWYSNHWV
91 - 99 9
AbM
ALWYSNHWV
91 - 99 9
Kabat
ALWYSNHWV
91 - 99 9
Contact
ALWYSNHW-
91 - 98 8
IMGT
ALWYSNHWV
91 - 99 9
LFR4 Chothia
-FGGGTKLTVLGQP
100 - 112 13
AbM
-FGGGTKLTVLGQP
100 - 112 13
Kabat
-FGGGTKLTVLGQP
100 - 112 13
Contact
VFGGGTKLTVLGQP
99 - 112 14
IMGT
-FGGGTKLTVLGQP
100 - 112 13
Humanness

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Accession & Annotations
Accession 2vit_A
Source PDB  2vit  Submitted 22-DEC-1997  Updated 03-NOV-2021
Name
INFLUENZA VIRUS HEMAGGLUTININ, MUTANT WITH THR 155 REPLACED BY ILE, COMPLEXED WITH A NEUTRALIZING ANTIBODY
Organism
Mus musculus
Chain Type Light
Pairing 2vit_B
Identical Protein Sequences PDB: 1gig_L 2vir_A 2vis_A 7jti_L
References
FLEURY D., WHARTON A., SKEHEL J., KNOSSOW M., BIZEBARD T.
'ANTIGEN DISTORTION ALLOWS INFLUENZA VIRUS TO ESCAPE NEUTRALIZATION.'
NAT.STRUCT.BIOL. V. 5 119 1998 ISSN 1072-8368
Sequences
Amino Acid Sequence:
QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGV
PARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTL
FPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSY
LTLTARAWERHSSYSCQVTHEGHTVEKSLS

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
2vit_B
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2vit_A
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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