abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
ASVLTQPPSVSGAPGQRVTISC
1 - 22 22
CDR-L1
TGSSSNIGAGHNVK
23 - 36 14
LFR2
WYQQLPGTAPKLLIF
37 - 51 15
CDR-L2
HNNARFSVSKS
52 - 62 11
LFR3
GTSATLAITGLQAEDEADYYC
63 - 83 21
CDR-L3
QSYDRSLRV
84 - 92 9
LFR4
FGGGTKLTVLRQP
93 - 105 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
106 - 208 103
208
Region Sequence Fragment Residues Length
LFR1
ASVLTQPPSVSGAPGQRVTISC
1 - 22 22
CDR-L1
TGSSSNIGAGHNVK
23 - 36 14
LFR2
WYQQLPGTAPKLLIF
37 - 51 15
CDR-L2
HNNARFSVSKS
52 - 62 11
LFR3
GTSATLAITGLQAEDEADYYC
63 - 83 21
CDR-L3
QSYDRSLRV
84 - 92 9
LFR4
FGGGTKLTVLRQP
93 - 105 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
106 - 208 103
208
Region Sequence Fragment Residues Length
LFR1
ASVLTQPPSVSGAPGQRVTISC
1 - 22 22
CDR-L1
TGSSSNIGAGHNVK
23 - 36 14
LFR2
WYQQLPGTAPKLLIF
37 - 51 15
CDR-L2
HNNARFSVSKS
52 - 62 11
LFR3
GTSATLAITGLQAEDEADYYC
63 - 83 21
CDR-L3
QSYDRSLRV
84 - 92 9
LFR4
FGGGTKLTVLRQP
93 - 105 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
106 - 208 103
208
Region Sequence Fragment Residues Length
LFR1
ASVLTQPPSVSGAPGQRVTISCTGSSSN
1 - 28 28
CDR-L1
IGAGHNVKWY
29 - 38 10
LFR2
QQLPGTAPK
39 - 47 9
CDR-L2
LLIFHNNARFSVSK
48 - 61 14
LFR3
SGTSATLAITGLQAEDEADYYC
62 - 83 22
CDR-L3
QSYDRSLR
84 - 91 8
LFR4
VFGGGTKLTVLRQP
92 - 105 14
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
106 - 208 103
208
Region Sequence Fragment Residues Length
LFR1
ASVLTQPPSVSGAPGQRVTISCTGS
1 - 25 25
CDR-L1
SSNIGAGHN
26 - 34 9
LFR2
VKWYQQLPGTAPKLLIF
35 - 51 17
CDR-L2
HNNARF
52 - 57 6
LFR3
SVSKSGTSATLAITGLQAEDEADYYC
58 - 83 26
CDR-L3
QSYDRSLRV
84 - 92 9
LFR4
FGGGTKLTVLRQP
93 - 105 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
106 - 208 103
208
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
ASVLTQPPSVSGAPGQRVTISC------
1 - 22 22
AbM
ASVLTQPPSVSGAPGQRVTISC------
1 - 22 22
Kabat
ASVLTQPPSVSGAPGQRVTISC------
1 - 22 22
Contact
ASVLTQPPSVSGAPGQRVTISCTGSSSN
1 - 28 28
IMGT
ASVLTQPPSVSGAPGQRVTISCTGS---
1 - 25 25
CDR-L1 Chothia
TGSSSNIGAGHNVK--
23 - 36 14
AbM
TGSSSNIGAGHNVK--
23 - 36 14
Kabat
TGSSSNIGAGHNVK--
23 - 36 14
Contact
------IGAGHNVKWY
29 - 38 10
IMGT
---SSNIGAGHN----
26 - 34 9
LFR2 Chothia
--WYQQLPGTAPKLLIF
37 - 51 15
AbM
--WYQQLPGTAPKLLIF
37 - 51 15
Kabat
--WYQQLPGTAPKLLIF
37 - 51 15
Contact
----QQLPGTAPK----
39 - 47 9
IMGT
VKWYQQLPGTAPKLLIF
35 - 51 17
CDR-L2 Chothia
----HNNARFSVSKS
52 - 62 11
AbM
----HNNARFSVSKS
52 - 62 11
Kabat
----HNNARFSVSKS
52 - 62 11
Contact
LLIFHNNARFSVSK-
48 - 61 14
IMGT
----HNNARF-----
52 - 57 6
LFR3 Chothia
-----GTSATLAITGLQAEDEADYYC
63 - 83 21
AbM
-----GTSATLAITGLQAEDEADYYC
63 - 83 21
Kabat
-----GTSATLAITGLQAEDEADYYC
63 - 83 21
Contact
----SGTSATLAITGLQAEDEADYYC
62 - 83 22
IMGT
SVSKSGTSATLAITGLQAEDEADYYC
58 - 83 26
CDR-L3 Chothia
QSYDRSLRV
84 - 92 9
AbM
QSYDRSLRV
84 - 92 9
Kabat
QSYDRSLRV
84 - 92 9
Contact
QSYDRSLR-
84 - 91 8
IMGT
QSYDRSLRV
84 - 92 9
LFR4 Chothia
-FGGGTKLTVLRQP
93 - 105 13
AbM
-FGGGTKLTVLRQP
93 - 105 13
Kabat
-FGGGTKLTVLRQP
93 - 105 13
Contact
VFGGGTKLTVLRQP
92 - 105 14
IMGT
-FGGGTKLTVLRQP
93 - 105 13
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 7fab_L
Source PDB  7fab  Submitted 20-NOV-1991  Updated 24-JUL-2013
Name
CRYSTAL STRUCTURE OF HUMAN IMMUNOGLOBULIN FRAGMENT FAB NEW REFINED AT 2.0 ANGSTROMS RESOLUTION
Organism
Homo sapiens
Human Subgroup Lambda Light chain subgroup I
Chain Type Light
Pairing 7fab_H
Identical Protein Sequences None
References
SAUL A., POLJAK J.
'CRYSTAL STRUCTURE OF HUMAN IMMUNOGLOBULIN FRAGMENT FAB NEW REFINED AT 2.0 A RESOLUTION.'
PROTEINS V. 14 363 1992 ISSN 0887-3585
Sequences
Amino Acid Sequence:
ASVLTQPPSVSGAPGQRVTISCTGSSSNIGAGHNVKWYQQLPGTAPKLLIFHNNARFSVS
KSGTSATLAITGLQAEDEADYYCQSYDRSLRVFGGGTKLTVLRQPKAAPSVTLFPPSSEE
LQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQ
WKSHKSYSCQVTHEGSTVEKTVAPTECS

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
7fab_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
7fab_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual