abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLSVSAGERVTMSC
1 - 23 23
CDR-L1
KSSQSLLNSGNQKNFLA
24 - 40 17
LFR2
WYQQKPGQPPKLLIY
41 - 55 15
CDR-L2
GASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
CDR-L3
QNDHSYPLT
95 - 103 9
LFR4
FGAGTKLEIKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLSVSAGERVTMSC
1 - 23 23
CDR-L1
KSSQSLLNSGNQKNFLA
24 - 40 17
LFR2
WYQQKPGQPPKLLIY
41 - 55 15
CDR-L2
GASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
CDR-L3
QNDHSYPLT
95 - 103 9
LFR4
FGAGTKLEIKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLSVSAGERVTMSC
1 - 23 23
CDR-L1
KSSQSLLNSGNQKNFLA
24 - 40 17
LFR2
WYQQKPGQPPKLLIY
41 - 55 15
CDR-L2
GASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
CDR-L3
QNDHSYPLT
95 - 103 9
LFR4
FGAGTKLEIKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLSVSAGERVTMSCKSSQSL
1 - 29 29
CDR-L1
LNSGNQKNFLAWY
30 - 42 13
LFR2
QQKPGQPPK
43 - 51 9
CDR-L2
LLIYGASTRE
52 - 61 10
LFR3
SGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
62 - 94 33
CDR-L3
QNDHSYPL
95 - 102 8
LFR4
TFGAGTKLEIKRA
103 - 115 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLSVSAGERVTMSCKSS
1 - 26 26
CDR-L1
QSLLNSGNQKNF
27 - 38 12
LFR2
LAWYQQKPGQPPKLLIY
39 - 55 17
CDR-L2
GA
56 - 57 2
LFR3
STRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
58 - 94 37
CDR-L3
QNDHSYPLT
95 - 103 9
LFR4
FGAGTKLEIKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
116 - 220 105
220
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIVMTQSPSSLSVSAGERVTMSC------
1 - 23 23
AbM
DIVMTQSPSSLSVSAGERVTMSC------
1 - 23 23
Kabat
DIVMTQSPSSLSVSAGERVTMSC------
1 - 23 23
Contact
DIVMTQSPSSLSVSAGERVTMSCKSSQSL
1 - 29 29
IMGT
DIVMTQSPSSLSVSAGERVTMSCKSS---
1 - 26 26
CDR-L1 Chothia
KSSQSLLNSGNQKNFLA--
24 - 40 17
AbM
KSSQSLLNSGNQKNFLA--
24 - 40 17
Kabat
KSSQSLLNSGNQKNFLA--
24 - 40 17
Contact
------LNSGNQKNFLAWY
30 - 42 13
IMGT
---QSLLNSGNQKNF----
27 - 38 12
LFR2 Chothia
--WYQQKPGQPPKLLIY
41 - 55 15
AbM
--WYQQKPGQPPKLLIY
41 - 55 15
Kabat
--WYQQKPGQPPKLLIY
41 - 55 15
Contact
----QQKPGQPPK----
43 - 51 9
IMGT
LAWYQQKPGQPPKLLIY
39 - 55 17
CDR-L2 Chothia
----GASTRES
56 - 62 7
AbM
----GASTRES
56 - 62 7
Kabat
----GASTRES
56 - 62 7
Contact
LLIYGASTRE-
52 - 61 10
IMGT
----GA-----
56 - 57 2
LFR3 Chothia
-----GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
AbM
-----GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
Kabat
-----GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
Contact
----SGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
62 - 94 33
IMGT
STRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
58 - 94 37
CDR-L3 Chothia
QNDHSYPLT
95 - 103 9
AbM
QNDHSYPLT
95 - 103 9
Kabat
QNDHSYPLT
95 - 103 9
Contact
QNDHSYPL-
95 - 102 8
IMGT
QNDHSYPLT
95 - 103 9
LFR4 Chothia
-FGAGTKLEIKRA
104 - 115 12
AbM
-FGAGTKLEIKRA
104 - 115 12
Kabat
-FGAGTKLEIKRA
104 - 115 12
Contact
TFGAGTKLEIKRA
103 - 115 13
IMGT
-FGAGTKLEIKRA
104 - 115 12
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 1mcp_L
Source PDB  1mcp  Submitted 09-JUL-1984  Updated 13-JUL-2011
Name
PHOSPHOCHOLINE BINDING IMMUNOGLOBULIN FAB MC/PC603. AN X-RAY DIFFRACTION STUDY AT 2.7 ANGSTROMS
Organism
Mus musculus
Chain Type Light
Pairing 1mcp_H
Identical Protein Sequences PDB: 2mcp_L
References
SATOW Y., COHEN H., PADLAN A., DAVIES R.
'PHOSPHOCHOLINE BINDING IMMUNOGLOBULIN FAB MCPC603. AN X-RAY DIFFRACTION STUDY AT 2.7 A.'
J.MOL.BIOL. V. 190 593 1986 ISSN 0022-2836
Sequences
Amino Acid Sequence:
DIVMTQSPSSLSVSAGERVTMSCKSSQSLLNSGNQKNFLAWYQQKPGQPPKLLIYGASTR
ESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAGTKLEIKRADAAPT
VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS
MSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
1mcp_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1mcp_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual