abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELMKPGASVKISCKAS
1 - 25 25
CDR-H1
GYTFSDY
26 - 32 7
HFR2
WIEWVKQRPGHGLEWIGEI
33 - 51 19
CDR-H2
LPGSGS
52 - 57 6
HFR3
TNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLH
58 - 98 41
CDR-H3
GNYDFDG
99 - 105 7
HFR4
WGQGTTLTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKILD
117 - 215 99
215
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELMKPGASVKISCKAS
1 - 25 25
CDR-H1
GYTFSDYWIE
26 - 35 10
HFR2
WVKQRPGHGLEWIG
36 - 49 14
CDR-H2
EILPGSGSTN
50 - 59 10
HFR3
YHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLH
60 - 98 39
CDR-H3
GNYDFDG
99 - 105 7
HFR4
WGQGTTLTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKILD
117 - 215 99
215
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELMKPGASVKISCKASGYTFS
1 - 30 30
CDR-H1
DYWIE
31 - 35 5
HFR2
WVKQRPGHGLEWIG
36 - 49 14
CDR-H2
EILPGSGSTNYHERFKG
50 - 66 17
HFR3
KATFTADTSSSTAYMQLNSLTSEDSGVYYCLH
67 - 98 32
CDR-H3
GNYDFDG
99 - 105 7
HFR4
WGQGTTLTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKILD
117 - 215 99
215
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELMKPGASVKISCKASGYTF
1 - 29 29
CDR-H1
SDYWIE
30 - 35 6
HFR2
WVKQRPGHGLE
36 - 46 11
CDR-H2
WIGEILPGSGSTN
47 - 59 13
HFR3
YHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYC
60 - 96 37
CDR-H3
LHGNYDFD
97 - 104 8
HFR4
GWGQGTTLTVSS
105 - 116 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKILD
117 - 215 99
215
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELMKPGASVKISCKAS
1 - 25 25
CDR-H1
GYTFSDYW
26 - 33 8
HFR2
IEWVKQRPGHGLEWIGE
34 - 50 17
CDR-H2
ILPGSGST
51 - 58 8
HFR3
NYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYC
59 - 96 38
CDR-H3
LHGNYDFDG
97 - 105 9
HFR4
WGQGTTLTVSS
106 - 116 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKILD
117 - 215 99
215
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVQLQQSGAELMKPGASVKISCKAS-----
1 - 25 25
AbM
EVQLQQSGAELMKPGASVKISCKAS-----
1 - 25 25
Kabat
EVQLQQSGAELMKPGASVKISCKASGYTFS
1 - 30 30
Contact
EVQLQQSGAELMKPGASVKISCKASGYTF-
1 - 29 29
IMGT
EVQLQQSGAELMKPGASVKISCKAS-----
1 - 25 25
CDR-H1 Chothia
GYTFSDY---
26 - 32 7
AbM
GYTFSDYWIE
26 - 35 10
Kabat
-----DYWIE
31 - 35 5
Contact
----SDYWIE
30 - 35 6
IMGT
GYTFSDYW--
26 - 33 8
HFR2 Chothia
WIEWVKQRPGHGLEWIGEI
33 - 51 19
AbM
---WVKQRPGHGLEWIG--
36 - 49 14
Kabat
---WVKQRPGHGLEWIG--
36 - 49 14
Contact
---WVKQRPGHGLE-----
36 - 46 11
IMGT
-IEWVKQRPGHGLEWIGE-
34 - 50 17
CDR-H2 Chothia
-----LPGSGS---------
52 - 57 6
AbM
---EILPGSGSTN-------
50 - 59 10
Kabat
---EILPGSGSTNYHERFKG
50 - 66 17
Contact
WIGEILPGSGSTN-------
47 - 59 13
IMGT
----ILPGSGST--------
51 - 58 8
HFR3 Chothia
TNYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLH
58 - 98 41
AbM
--YHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLH
60 - 98 39
Kabat
---------KATFTADTSSSTAYMQLNSLTSEDSGVYYCLH
67 - 98 32
Contact
--YHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYC--
60 - 96 37
IMGT
-NYHERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYC--
59 - 96 38
CDR-H3 Chothia
--GNYDFDG
99 - 105 7
AbM
--GNYDFDG
99 - 105 7
Kabat
--GNYDFDG
99 - 105 7
Contact
LHGNYDFD-
97 - 104 8
IMGT
LHGNYDFDG
97 - 105 9
HFR4 Chothia
-WGQGTTLTVSS
106 - 116 11
AbM
-WGQGTTLTVSS
106 - 116 11
Kabat
-WGQGTTLTVSS
106 - 116 11
Contact
GWGQGTTLTVSS
105 - 116 12
IMGT
-WGQGTTLTVSS
106 - 116 11
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 1yqv_H
Source PDB  1yqv  Submitted 02-FEB-2005  Updated 11-OCT-2017
Name
THE CRYSTAL STRUCTURE OF THE ANTIBODY FAB HYHEL5 COMPLEX WITH LYSOZYME AT 1.7A RESOLUTION
Organism
Mus musculus
Chain Type Heavy
Pairing 1yqv_L
Identical Protein Sequences None
References
COHEN H., SILVERTON W., PADLAN A., DYDA F., WIBBENMEYER A., WILLSON C., DAVIES R.
'WATER MOLECULES IN THE ANTIBODY-ANTIGEN INTERFACE OF THE STRUCTURE OF THE FAB HYHEL-5-LYSOZYME COMPLEX AT 1.7 A RESOLUTION: COMPARISON WITH RESULTS FROM ISOTHERMAL TITRATION CALORIMETRY.'
ACTA CRYSTALLOGR.,SECT.D V. 61 628 2005 ISSN 0907-4449
Sequences
Amino Acid Sequence:
EVQLQQSGAELMKPGASVKISCKASGYTFSDYWIEWVKQRPGHGLEWIGEILPGSGSTNY
HERFKGKATFTADTSSSTAYMQLNSLTSEDSGVYYCLHGNYDFDGWGQGTTLTVSSAKTT
PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL
SSSVTVPSSTWPSETVTCNVAHPASSTKVDKKILD

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
1yqv_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1yqv_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual