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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
AVKLVQAGGGVVQPGRSLRLSCIAS
1 - 25 25
CDR-H1
GFTFSNY
26 - 32 7
HFR2
GMHWVRQAPGKGLEWVAVI
33 - 51 19
CDR-H2
WYNGSR
52 - 57 6
HFR3
TYYGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCAR
58 - 98 41
CDR-H3
DPDILTAFSFDY
99 - 110 12
HFR4
WGQGVLVTVSS
111 - 121 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
122 - 224 103
224
Region Sequence Fragment Residues Length
HFR1
AVKLVQAGGGVVQPGRSLRLSCIAS
1 - 25 25
CDR-H1
GFTFSNYGMH
26 - 35 10
HFR2
WVRQAPGKGLEWVA
36 - 49 14
CDR-H2
VIWYNGSRTY
50 - 59 10
HFR3
YGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCAR
60 - 98 39
CDR-H3
DPDILTAFSFDY
99 - 110 12
HFR4
WGQGVLVTVSS
111 - 121 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
122 - 224 103
224
Region Sequence Fragment Residues Length
HFR1
AVKLVQAGGGVVQPGRSLRLSCIASGFTFS
1 - 30 30
CDR-H1
NYGMH
31 - 35 5
HFR2
WVRQAPGKGLEWVA
36 - 49 14
CDR-H2
VIWYNGSRTYYGDSVKG
50 - 66 17
HFR3
RFTISRDNSKRTLYMQMNSLRTEDTAVYYCAR
67 - 98 32
CDR-H3
DPDILTAFSFDY
99 - 110 12
HFR4
WGQGVLVTVSS
111 - 121 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
122 - 224 103
224
Region Sequence Fragment Residues Length
HFR1
AVKLVQAGGGVVQPGRSLRLSCIASGFTF
1 - 29 29
CDR-H1
SNYGMH
30 - 35 6
HFR2
WVRQAPGKGLE
36 - 46 11
CDR-H2
WVAVIWYNGSRTY
47 - 59 13
HFR3
YGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYC
60 - 96 37
CDR-H3
ARDPDILTAFSFD
97 - 109 13
HFR4
YWGQGVLVTVSS
110 - 121 12
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
122 - 224 103
224
Region Sequence Fragment Residues Length
HFR1
AVKLVQAGGGVVQPGRSLRLSCIAS
1 - 25 25
CDR-H1
GFTFSNYG
26 - 33 8
HFR2
MHWVRQAPGKGLEWVAV
34 - 50 17
CDR-H2
IWYNGSRT
51 - 58 8
HFR3
YYGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYC
59 - 96 38
CDR-H3
ARDPDILTAFSFDY
97 - 110 14
HFR4
WGQGVLVTVSS
111 - 121 11
Tail
ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSS
GLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
122 - 224 103
224
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
AVKLVQAGGGVVQPGRSLRLSCIAS-----
1 - 25 25
AbM
AVKLVQAGGGVVQPGRSLRLSCIAS-----
1 - 25 25
Kabat
AVKLVQAGGGVVQPGRSLRLSCIASGFTFS
1 - 30 30
Contact
AVKLVQAGGGVVQPGRSLRLSCIASGFTF-
1 - 29 29
IMGT
AVKLVQAGGGVVQPGRSLRLSCIAS-----
1 - 25 25
CDR-H1 Chothia
GFTFSNY---
26 - 32 7
AbM
GFTFSNYGMH
26 - 35 10
Kabat
-----NYGMH
31 - 35 5
Contact
----SNYGMH
30 - 35 6
IMGT
GFTFSNYG--
26 - 33 8
HFR2 Chothia
GMHWVRQAPGKGLEWVAVI
33 - 51 19
AbM
---WVRQAPGKGLEWVA--
36 - 49 14
Kabat
---WVRQAPGKGLEWVA--
36 - 49 14
Contact
---WVRQAPGKGLE-----
36 - 46 11
IMGT
-MHWVRQAPGKGLEWVAV-
34 - 50 17
CDR-H2 Chothia
-----WYNGSR---------
52 - 57 6
AbM
---VIWYNGSRTY-------
50 - 59 10
Kabat
---VIWYNGSRTYYGDSVKG
50 - 66 17
Contact
WVAVIWYNGSRTY-------
47 - 59 13
IMGT
----IWYNGSRT--------
51 - 58 8
HFR3 Chothia
TYYGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCAR
58 - 98 41
AbM
--YGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCAR
60 - 98 39
Kabat
---------RFTISRDNSKRTLYMQMNSLRTEDTAVYYCAR
67 - 98 32
Contact
--YGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYC--
60 - 96 37
IMGT
-YYGDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYC--
59 - 96 38
CDR-H3 Chothia
--DPDILTAFSFDY
99 - 110 12
AbM
--DPDILTAFSFDY
99 - 110 12
Kabat
--DPDILTAFSFDY
99 - 110 12
Contact
ARDPDILTAFSFD-
97 - 109 13
IMGT
ARDPDILTAFSFDY
97 - 110 14
HFR4 Chothia
-WGQGVLVTVSS
111 - 121 11
AbM
-WGQGVLVTVSS
111 - 121 11
Kabat
-WGQGVLVTVSS
111 - 121 11
Contact
YWGQGVLVTVSS
110 - 121 12
IMGT
-WGQGVLVTVSS
111 - 121 11
Humanness

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Accession & Annotations
Accession 8fab_D
Source PDB  8fab  Submitted 23-MAR-1992  Updated 24-FEB-2009
Name
CRYSTAL STRUCTURE OF THE FAB FRAGMENT FROM THE HUMAN MYELOMA IMMUNOGLOBULIN IGG HIL AT 1.8 ANGSTROMS RESOLUTION
Organism
Homo sapiens
Human Subgroup Heavy chain subgroup III
Chain Type Heavy
Pairing 8fab_C
Identical Protein Sequences PDB: 8fab_B
References
STRONG K., CAMPBELL R., ROSE R., PETSKO A., SHARON J., MARGOLIES N.
'THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P-AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN.'
BIOCHEMISTRY V. 30 3739 1991 ISSN 0006-2960
Sequences
Amino Acid Sequence:
AVKLVQAGGGVVQPGRSLRLSCIASGFTFSNYGMHWVRQAPGKGLEWVAVIWYNGSRTYY
GDSVKGRFTISRDNSKRTLYMQMNSLRTEDTAVYYCARDPDILTAFSFDYWGQGVLVTVS
SASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQS
SGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
8fab_D
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
8fab_C
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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