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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
QIVLTQSPAIMSASPGEKVTMTC
1 - 23 23
CDR-L1
SASSSVYYMY
24 - 33 10
LFR2
WYQQKPGSSPRLLIY
34 - 48 15
CDR-L2
DTSNLAS
49 - 55 7
LFR3
GVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
56 - 87 32
CDR-L3
QQWSSYPPIT
88 - 97 10
LFR4
FGVGTKLELKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
QIVLTQSPAIMSASPGEKVTMTC
1 - 23 23
CDR-L1
SASSSVYYMY
24 - 33 10
LFR2
WYQQKPGSSPRLLIY
34 - 48 15
CDR-L2
DTSNLAS
49 - 55 7
LFR3
GVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
56 - 87 32
CDR-L3
QQWSSYPPIT
88 - 97 10
LFR4
FGVGTKLELKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
QIVLTQSPAIMSASPGEKVTMTC
1 - 23 23
CDR-L1
SASSSVYYMY
24 - 33 10
LFR2
WYQQKPGSSPRLLIY
34 - 48 15
CDR-L2
DTSNLAS
49 - 55 7
LFR3
GVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
56 - 87 32
CDR-L3
QQWSSYPPIT
88 - 97 10
LFR4
FGVGTKLELKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
QIVLTQSPAIMSASPGEKVTMTCSASSSV
1 - 29 29
CDR-L1
YYMYWY
30 - 35 6
LFR2
QQKPGSSPR
36 - 44 9
CDR-L2
LLIYDTSNLA
45 - 54 10
LFR3
SGVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
55 - 87 33
CDR-L3
QQWSSYPPI
88 - 96 9
LFR4
TFGVGTKLELKRA
97 - 109 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Sequence Fragment Residues Length
LFR1
QIVLTQSPAIMSASPGEKVTMTCSAS
1 - 26 26
CDR-L1
SSVYY
27 - 31 5
LFR2
MYWYQQKPGSSPRLLIY
32 - 48 17
CDR-L2
DT
49 - 50 2
LFR3
SNLASGVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
51 - 87 37
CDR-L3
QQWSSYPPIT
88 - 97 10
LFR4
FGVGTKLELKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 214 105
214
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
QIVLTQSPAIMSASPGEKVTMTC------
1 - 23 23
AbM
QIVLTQSPAIMSASPGEKVTMTC------
1 - 23 23
Kabat
QIVLTQSPAIMSASPGEKVTMTC------
1 - 23 23
Contact
QIVLTQSPAIMSASPGEKVTMTCSASSSV
1 - 29 29
IMGT
QIVLTQSPAIMSASPGEKVTMTCSAS---
1 - 26 26
CDR-L1 Chothia
SASSSVYYMY--
24 - 33 10
AbM
SASSSVYYMY--
24 - 33 10
Kabat
SASSSVYYMY--
24 - 33 10
Contact
------YYMYWY
30 - 35 6
IMGT
---SSVYY----
27 - 31 5
LFR2 Chothia
--WYQQKPGSSPRLLIY
34 - 48 15
AbM
--WYQQKPGSSPRLLIY
34 - 48 15
Kabat
--WYQQKPGSSPRLLIY
34 - 48 15
Contact
----QQKPGSSPR----
36 - 44 9
IMGT
MYWYQQKPGSSPRLLIY
32 - 48 17
CDR-L2 Chothia
----DTSNLAS
49 - 55 7
AbM
----DTSNLAS
49 - 55 7
Kabat
----DTSNLAS
49 - 55 7
Contact
LLIYDTSNLA-
45 - 54 10
IMGT
----DT-----
49 - 50 2
LFR3 Chothia
-----GVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
56 - 87 32
AbM
-----GVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
56 - 87 32
Kabat
-----GVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
56 - 87 32
Contact
----SGVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
55 - 87 33
IMGT
SNLASGVPVRFSGSGSGTSYSLTISRMEAEDAATYYC
51 - 87 37
CDR-L3 Chothia
QQWSSYPPIT
88 - 97 10
AbM
QQWSSYPPIT
88 - 97 10
Kabat
QQWSSYPPIT
88 - 97 10
Contact
QQWSSYPPI-
88 - 96 9
IMGT
QQWSSYPPIT
88 - 97 10
LFR4 Chothia
-FGVGTKLELKRA
98 - 109 12
AbM
-FGVGTKLELKRA
98 - 109 12
Kabat
-FGVGTKLELKRA
98 - 109 12
Contact
TFGVGTKLELKRA
97 - 109 13
IMGT
-FGVGTKLELKRA
98 - 109 12
Humanness

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Accession & Annotations
Accession 1baf_L
Source PDB  1baf  Submitted 16-JAN-1992  Updated 18-SEP-2013
Name
2.9 ANGSTROMS RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN
Organism
Mus musculus
Chain Type Light
Pairing 1baf_H
Identical Protein Sequences None
References
BRUNGER T., LEAHY J., HYNES R., FOX O.
'2.9 A RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN.'
J.MOL.BIOL. V. 221 239 1991 ISSN 0022-2836
Sequences
Amino Acid Sequence:
QIVLTQSPAIMSASPGEKVTMTCSASSSVYYMYWYQQKPGSSPRLLIYDTSNLASGVPVR
FSGSGSGTSYSLTISRMEAEDAATYYCQQWSSYPPITFGVGTKLELKRADAAPTVSIFPP
SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLT
LTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1baf_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1baf_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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