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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPGLVKPSQSQSLTCTVT
1 - 25 25
CDR-H1
GYSITSDY
26 - 33 8
HFR2
AWNWIRQFPGNKLEWMGYM
34 - 52 19
CDR-H2
SYSGS
53 - 57 5
HFR3
TRYNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCAR
58 - 98 41
CDR-H3
GWPLAY
99 - 104 6
HFR4
WGQGTQVSVSE
105 - 115 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
116 - 217 102
217
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPGLVKPSQSQSLTCTVT
1 - 25 25
CDR-H1
GYSITSDYAWN
26 - 36 11
HFR2
WIRQFPGNKLEWMG
37 - 50 14
CDR-H2
YMSYSGSTR
51 - 59 9
HFR3
YNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCAR
60 - 98 39
CDR-H3
GWPLAY
99 - 104 6
HFR4
WGQGTQVSVSE
105 - 115 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
116 - 217 102
217
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPGLVKPSQSQSLTCTVTGYSIT
1 - 30 30
CDR-H1
SDYAWN
31 - 36 6
HFR2
WIRQFPGNKLEWMG
37 - 50 14
CDR-H2
YMSYSGSTRYNPSLRS
51 - 66 16
HFR3
RISITRDTSKNQFFLQLKSVTTEDTATYFCAR
67 - 98 32
CDR-H3
GWPLAY
99 - 104 6
HFR4
WGQGTQVSVSE
105 - 115 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
116 - 217 102
217
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPGLVKPSQSQSLTCTVTGYSI
1 - 29 29
CDR-H1
TSDYAWN
30 - 36 7
HFR2
WIRQFPGNKLE
37 - 47 11
CDR-H2
WMGYMSYSGSTR
48 - 59 12
HFR3
YNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFC
60 - 96 37
CDR-H3
ARGWPLA
97 - 103 7
HFR4
YWGQGTQVSVSE
104 - 115 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
116 - 217 102
217
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPGLVKPSQSQSLTCTVT
1 - 25 25
CDR-H1
GYSITSDYA
26 - 34 9
HFR2
WNWIRQFPGNKLEWMGY
35 - 51 17
CDR-H2
MSYSGST
52 - 58 7
HFR3
RYNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFC
59 - 96 38
CDR-H3
ARGWPLAY
97 - 104 8
HFR4
WGQGTQVSVSE
105 - 115 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
116 - 217 102
217
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
DVQLQESGPGLVKPSQSQSLTCTVT-----
1 - 25 25
AbM
DVQLQESGPGLVKPSQSQSLTCTVT-----
1 - 25 25
Kabat
DVQLQESGPGLVKPSQSQSLTCTVTGYSIT
1 - 30 30
Contact
DVQLQESGPGLVKPSQSQSLTCTVTGYSI-
1 - 29 29
IMGT
DVQLQESGPGLVKPSQSQSLTCTVT-----
1 - 25 25
CDR-H1 Chothia
GYSITSDY---
26 - 33 8
AbM
GYSITSDYAWN
26 - 36 11
Kabat
-----SDYAWN
31 - 36 6
Contact
----TSDYAWN
30 - 36 7
IMGT
GYSITSDYA--
26 - 34 9
HFR2 Chothia
AWNWIRQFPGNKLEWMGYM
34 - 52 19
AbM
---WIRQFPGNKLEWMG--
37 - 50 14
Kabat
---WIRQFPGNKLEWMG--
37 - 50 14
Contact
---WIRQFPGNKLE-----
37 - 47 11
IMGT
-WNWIRQFPGNKLEWMGY-
35 - 51 17
CDR-H2 Chothia
-----SYSGS---------
53 - 57 5
AbM
---YMSYSGSTR-------
51 - 59 9
Kabat
---YMSYSGSTRYNPSLRS
51 - 66 16
Contact
WMGYMSYSGSTR-------
48 - 59 12
IMGT
----MSYSGST--------
52 - 58 7
HFR3 Chothia
TRYNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCAR
58 - 98 41
AbM
--YNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCAR
60 - 98 39
Kabat
---------RISITRDTSKNQFFLQLKSVTTEDTATYFCAR
67 - 98 32
Contact
--YNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFC--
60 - 96 37
IMGT
-RYNPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFC--
59 - 96 38
CDR-H3 Chothia
--GWPLAY
99 - 104 6
AbM
--GWPLAY
99 - 104 6
Kabat
--GWPLAY
99 - 104 6
Contact
ARGWPLA-
97 - 103 7
IMGT
ARGWPLAY
97 - 104 8
HFR4 Chothia
-WGQGTQVSVSE
105 - 115 11
AbM
-WGQGTQVSVSE
105 - 115 11
Kabat
-WGQGTQVSVSE
105 - 115 11
Contact
YWGQGTQVSVSE
104 - 115 12
IMGT
-WGQGTQVSVSE
105 - 115 11
Humanness

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Accession & Annotations
Accession 1baf_H
Source PDB  1baf  Submitted 16-JAN-1992  Updated 18-SEP-2013
Name
2.9 ANGSTROMS RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN
Organism
Mus musculus
Chain Type Heavy
Pairing 1baf_L
Identical Protein Sequences None
References
BRUNGER T., LEAHY J., HYNES R., FOX O.
'2.9 A RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN.'
J.MOL.BIOL. V. 221 239 1991 ISSN 0022-2836
Sequences
Amino Acid Sequence:
DVQLQESGPGLVKPSQSQSLTCTVTGYSITSDYAWNWIRQFPGNKLEWMGYMSYSGSTRY
NPSLRSRISITRDTSKNQFFLQLKSVTTEDTATYFCARGWPLAYWGQGTQVSVSEAKTTP
PSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS
SSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1baf_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1baf_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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