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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
QVQLAQSGPELVRPGVSVKISCKGS
1 - 25 25
CDR-H1
GYTFTTY
26 - 32 7
HFR2
AMHWVKQSHAKSLEWIGLI
33 - 51 19
CDR-H2
STYSGY
52 - 57 6
HFR3
TNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCAR
58 - 98 41
CDR-H3
VMGEQYFDV
99 - 107 9
HFR4
WGAGTTVIVSS
108 - 118 11
Tail
AATTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAAD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
QVQLAQSGPELVRPGVSVKISCKGS
1 - 25 25
CDR-H1
GYTFTTYAMH
26 - 35 10
HFR2
WVKQSHAKSLEWIG
36 - 49 14
CDR-H2
LISTYSGYTN
50 - 59 10
HFR3
YNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCAR
60 - 98 39
CDR-H3
VMGEQYFDV
99 - 107 9
HFR4
WGAGTTVIVSS
108 - 118 11
Tail
AATTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAAD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
QVQLAQSGPELVRPGVSVKISCKGSGYTFT
1 - 30 30
CDR-H1
TYAMH
31 - 35 5
HFR2
WVKQSHAKSLEWIG
36 - 49 14
CDR-H2
LISTYSGYTNYNQKFKG
50 - 66 17
HFR3
KATMTVDKSSSTAYMELARLTSEDSAIYYCAR
67 - 98 32
CDR-H3
VMGEQYFDV
99 - 107 9
HFR4
WGAGTTVIVSS
108 - 118 11
Tail
AATTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAAD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
QVQLAQSGPELVRPGVSVKISCKGSGYTF
1 - 29 29
CDR-H1
TTYAMH
30 - 35 6
HFR2
WVKQSHAKSLE
36 - 46 11
CDR-H2
WIGLISTYSGYTN
47 - 59 13
HFR3
YNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYC
60 - 96 37
CDR-H3
ARVMGEQYFD
97 - 106 10
HFR4
VWGAGTTVIVSS
107 - 118 12
Tail
AATTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAAD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
QVQLAQSGPELVRPGVSVKISCKGS
1 - 25 25
CDR-H1
GYTFTTYA
26 - 33 8
HFR2
MHWVKQSHAKSLEWIGL
34 - 50 17
CDR-H2
ISTYSGYT
51 - 58 8
HFR3
NYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYC
59 - 96 38
CDR-H3
ARVMGEQYFDV
97 - 107 11
HFR4
WGAGTTVIVSS
108 - 118 11
Tail
AATTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAAD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG
119 - 218 100
218
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
QVQLAQSGPELVRPGVSVKISCKGS-----
1 - 25 25
AbM
QVQLAQSGPELVRPGVSVKISCKGS-----
1 - 25 25
Kabat
QVQLAQSGPELVRPGVSVKISCKGSGYTFT
1 - 30 30
Contact
QVQLAQSGPELVRPGVSVKISCKGSGYTF-
1 - 29 29
IMGT
QVQLAQSGPELVRPGVSVKISCKGS-----
1 - 25 25
CDR-H1 Chothia
GYTFTTY---
26 - 32 7
AbM
GYTFTTYAMH
26 - 35 10
Kabat
-----TYAMH
31 - 35 5
Contact
----TTYAMH
30 - 35 6
IMGT
GYTFTTYA--
26 - 33 8
HFR2 Chothia
AMHWVKQSHAKSLEWIGLI
33 - 51 19
AbM
---WVKQSHAKSLEWIG--
36 - 49 14
Kabat
---WVKQSHAKSLEWIG--
36 - 49 14
Contact
---WVKQSHAKSLE-----
36 - 46 11
IMGT
-MHWVKQSHAKSLEWIGL-
34 - 50 17
CDR-H2 Chothia
-----STYSGY---------
52 - 57 6
AbM
---LISTYSGYTN-------
50 - 59 10
Kabat
---LISTYSGYTNYNQKFKG
50 - 66 17
Contact
WIGLISTYSGYTN-------
47 - 59 13
IMGT
----ISTYSGYT--------
51 - 58 8
HFR3 Chothia
TNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCAR
58 - 98 41
AbM
--YNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCAR
60 - 98 39
Kabat
---------KATMTVDKSSSTAYMELARLTSEDSAIYYCAR
67 - 98 32
Contact
--YNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYC--
60 - 96 37
IMGT
-NYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYC--
59 - 96 38
CDR-H3 Chothia
--VMGEQYFDV
99 - 107 9
AbM
--VMGEQYFDV
99 - 107 9
Kabat
--VMGEQYFDV
99 - 107 9
Contact
ARVMGEQYFD-
97 - 106 10
IMGT
ARVMGEQYFDV
97 - 107 11
HFR4 Chothia
-WGAGTTVIVSS
108 - 118 11
AbM
-WGAGTTVIVSS
108 - 118 11
Kabat
-WGAGTTVIVSS
108 - 118 11
Contact
VWGAGTTVIVSS
107 - 118 12
IMGT
-WGAGTTVIVSS
108 - 118 11
Humanness

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Accession & Annotations
Accession 2jel_H
Source PDB  2jel  Submitted 24-FEB-1998  Updated 18-APR-2018
Name
JEL42 FAB/HPR COMPLEX
Organism
Mus musculus
Chain Type Heavy
Pairing 2jel_L
Identical Protein Sequences None
References
PRASAD L., WAYGOOD B., LEE S., DELBAERE J.
'THE 2.5 A RESOLUTION STRUCTURE OF THE JEL42 FAB FRAGMENT/HPR COMPLEX'
J.MOL.BIOL. V. 280 829 1998 ISSN 0022-2836
Sequences
Amino Acid Sequence:
QVQLAQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNY
NQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCARVMGEQYFDVWGAGTTVIVSSAA
TTPPSVYPLAPGSGGQGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLAADLY
TLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIAPG

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
2jel_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2jel_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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