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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DVVMTQTPLSLPVSLGDQASISC
1 - 23 23
CDR-L1
RSSQSLVHSNGNTYLH
24 - 39 16
LFR2
WYLQKPGQSPKLLIY
40 - 54 15
CDR-L2
KVSNRFS
55 - 61 7
LFR3
GVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
62 - 93 32
CDR-L3
SQSTHVPLT
94 - 102 9
LFR4
FGAGTKLELKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
115 - 219 105
219
Region Sequence Fragment Residues Length
LFR1
DVVMTQTPLSLPVSLGDQASISC
1 - 23 23
CDR-L1
RSSQSLVHSNGNTYLH
24 - 39 16
LFR2
WYLQKPGQSPKLLIY
40 - 54 15
CDR-L2
KVSNRFS
55 - 61 7
LFR3
GVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
62 - 93 32
CDR-L3
SQSTHVPLT
94 - 102 9
LFR4
FGAGTKLELKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
115 - 219 105
219
Region Sequence Fragment Residues Length
LFR1
DVVMTQTPLSLPVSLGDQASISC
1 - 23 23
CDR-L1
RSSQSLVHSNGNTYLH
24 - 39 16
LFR2
WYLQKPGQSPKLLIY
40 - 54 15
CDR-L2
KVSNRFS
55 - 61 7
LFR3
GVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
62 - 93 32
CDR-L3
SQSTHVPLT
94 - 102 9
LFR4
FGAGTKLELKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
115 - 219 105
219
Region Sequence Fragment Residues Length
LFR1
DVVMTQTPLSLPVSLGDQASISCRSSQSL
1 - 29 29
CDR-L1
VHSNGNTYLHWY
30 - 41 12
LFR2
LQKPGQSPK
42 - 50 9
CDR-L2
LLIYKVSNRF
51 - 60 10
LFR3
SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
61 - 93 33
CDR-L3
SQSTHVPL
94 - 101 8
LFR4
TFGAGTKLELKRA
102 - 114 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
115 - 219 105
219
Region Sequence Fragment Residues Length
LFR1
DVVMTQTPLSLPVSLGDQASISCRSS
1 - 26 26
CDR-L1
QSLVHSNGNTY
27 - 37 11
LFR2
LHWYLQKPGQSPKLLIY
38 - 54 17
CDR-L2
KV
55 - 56 2
LFR3
SNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
57 - 93 37
CDR-L3
SQSTHVPLT
94 - 102 9
LFR4
FGAGTKLELKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
115 - 219 105
219
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DVVMTQTPLSLPVSLGDQASISC------
1 - 23 23
AbM
DVVMTQTPLSLPVSLGDQASISC------
1 - 23 23
Kabat
DVVMTQTPLSLPVSLGDQASISC------
1 - 23 23
Contact
DVVMTQTPLSLPVSLGDQASISCRSSQSL
1 - 29 29
IMGT
DVVMTQTPLSLPVSLGDQASISCRSS---
1 - 26 26
CDR-L1 Chothia
RSSQSLVHSNGNTYLH--
24 - 39 16
AbM
RSSQSLVHSNGNTYLH--
24 - 39 16
Kabat
RSSQSLVHSNGNTYLH--
24 - 39 16
Contact
------VHSNGNTYLHWY
30 - 41 12
IMGT
---QSLVHSNGNTY----
27 - 37 11
LFR2 Chothia
--WYLQKPGQSPKLLIY
40 - 54 15
AbM
--WYLQKPGQSPKLLIY
40 - 54 15
Kabat
--WYLQKPGQSPKLLIY
40 - 54 15
Contact
----LQKPGQSPK----
42 - 50 9
IMGT
LHWYLQKPGQSPKLLIY
38 - 54 17
CDR-L2 Chothia
----KVSNRFS
55 - 61 7
AbM
----KVSNRFS
55 - 61 7
Kabat
----KVSNRFS
55 - 61 7
Contact
LLIYKVSNRF-
51 - 60 10
IMGT
----KV-----
55 - 56 2
LFR3 Chothia
-----GVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
62 - 93 32
AbM
-----GVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
62 - 93 32
Kabat
-----GVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
62 - 93 32
Contact
----SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
61 - 93 33
IMGT
SNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFC
57 - 93 37
CDR-L3 Chothia
SQSTHVPLT
94 - 102 9
AbM
SQSTHVPLT
94 - 102 9
Kabat
SQSTHVPLT
94 - 102 9
Contact
SQSTHVPL-
94 - 101 8
IMGT
SQSTHVPLT
94 - 102 9
LFR4 Chothia
-FGAGTKLELKRA
103 - 114 12
AbM
-FGAGTKLELKRA
103 - 114 12
Kabat
-FGAGTKLELKRA
103 - 114 12
Contact
TFGAGTKLELKRA
102 - 114 13
IMGT
-FGAGTKLELKRA
103 - 114 12
Humanness

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Accession & Annotations
Accession 1nbv_L
Source PDB  1nbv  Submitted 16-MAR-1993  Updated 14-AUG-2019
Name
AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE- DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE- FAB COMPLEX
Organism
Mus musculus
Chain Type Light
Pairing 1nbv_H
Identical Protein Sequences PDB: 1cbv_L
References
HERRON N., HE M., BALLARD W., BLIER R., PACE E., BOTHWELL L., VOSS JR W., EDMUNDSON B.
'AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX.'
PROTEINS V. 11 159 1991 ISSN 0887-3585
Sequences
Amino Acid Sequence:
DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRF
SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPLTFGAGTKLELKRADAAPTV
SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM
SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1nbv_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1nbv_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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