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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTAGEKVTMSC
1 - 23 23
CDR-L1
TSSQSLFNSGKQKNYLT
24 - 40 17
LFR2
WYQQKPGQPPKVLIY
41 - 55 15
CDR-L2
WASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
CDR-L3
QNDYSNPLT
95 - 103 9
LFR4
FGGGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
116 - 217 102
217
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTAGEKVTMSC
1 - 23 23
CDR-L1
TSSQSLFNSGKQKNYLT
24 - 40 17
LFR2
WYQQKPGQPPKVLIY
41 - 55 15
CDR-L2
WASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
CDR-L3
QNDYSNPLT
95 - 103 9
LFR4
FGGGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
116 - 217 102
217
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTAGEKVTMSC
1 - 23 23
CDR-L1
TSSQSLFNSGKQKNYLT
24 - 40 17
LFR2
WYQQKPGQPPKVLIY
41 - 55 15
CDR-L2
WASTRES
56 - 62 7
LFR3
GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
CDR-L3
QNDYSNPLT
95 - 103 9
LFR4
FGGGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
116 - 217 102
217
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTAGEKVTMSCTSSQSL
1 - 29 29
CDR-L1
FNSGKQKNYLTWY
30 - 42 13
LFR2
QQKPGQPPK
43 - 51 9
CDR-L2
VLIYWASTRE
52 - 61 10
LFR3
SGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
62 - 94 33
CDR-L3
QNDYSNPL
95 - 102 8
LFR4
TFGGGTKLELKRA
103 - 115 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
116 - 217 102
217
Region Sequence Fragment Residues Length
LFR1
DIVMTQSPSSLTVTAGEKVTMSCTSS
1 - 26 26
CDR-L1
QSLFNSGKQKNY
27 - 38 12
LFR2
LTWYQQKPGQPPKVLIY
39 - 55 17
CDR-L2
WA
56 - 57 2
LFR3
STRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
58 - 94 37
CDR-L3
QNDYSNPLT
95 - 103 9
LFR4
FGGGTKLELKRA
104 - 115 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
116 - 217 102
217
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIVMTQSPSSLTVTAGEKVTMSC------
1 - 23 23
AbM
DIVMTQSPSSLTVTAGEKVTMSC------
1 - 23 23
Kabat
DIVMTQSPSSLTVTAGEKVTMSC------
1 - 23 23
Contact
DIVMTQSPSSLTVTAGEKVTMSCTSSQSL
1 - 29 29
IMGT
DIVMTQSPSSLTVTAGEKVTMSCTSS---
1 - 26 26
CDR-L1 Chothia
TSSQSLFNSGKQKNYLT--
24 - 40 17
AbM
TSSQSLFNSGKQKNYLT--
24 - 40 17
Kabat
TSSQSLFNSGKQKNYLT--
24 - 40 17
Contact
------FNSGKQKNYLTWY
30 - 42 13
IMGT
---QSLFNSGKQKNY----
27 - 38 12
LFR2 Chothia
--WYQQKPGQPPKVLIY
41 - 55 15
AbM
--WYQQKPGQPPKVLIY
41 - 55 15
Kabat
--WYQQKPGQPPKVLIY
41 - 55 15
Contact
----QQKPGQPPK----
43 - 51 9
IMGT
LTWYQQKPGQPPKVLIY
39 - 55 17
CDR-L2 Chothia
----WASTRES
56 - 62 7
AbM
----WASTRES
56 - 62 7
Kabat
----WASTRES
56 - 62 7
Contact
VLIYWASTRE-
52 - 61 10
IMGT
----WA-----
56 - 57 2
LFR3 Chothia
-----GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
AbM
-----GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
Kabat
-----GVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
63 - 94 32
Contact
----SGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
62 - 94 33
IMGT
STRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC
58 - 94 37
CDR-L3 Chothia
QNDYSNPLT
95 - 103 9
AbM
QNDYSNPLT
95 - 103 9
Kabat
QNDYSNPLT
95 - 103 9
Contact
QNDYSNPL-
95 - 102 8
IMGT
QNDYSNPLT
95 - 103 9
LFR4 Chothia
-FGGGTKLELKRA
104 - 115 12
AbM
-FGGGTKLELKRA
104 - 115 12
Kabat
-FGGGTKLELKRA
104 - 115 12
Contact
TFGGGTKLELKRA
103 - 115 13
IMGT
-FGGGTKLELKRA
104 - 115 12
Humanness

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Accession & Annotations
Accession 1him_J
Source PDB  1him  Submitted 08-JUL-1992  Updated 23-DEC-2015
Name
STRUCTURAL EVIDENCE FOR INDUCED FIT AS A MECHANISM FOR ANTIBODY- ANTIGEN RECOGNITION
Organism
Mus musculus
Chain Type Light
Pairing 1him_M
Identical Protein Sequences PDB: 1hil_A 1hil_C 1him_H 1hin_L
References
RINI M., SCHULZE-GAHMEN U., WILSON A.
'STRUCTURAL EVIDENCE FOR INDUCED FIT AS A MECHANISM FOR ANTIBODY-ANTIGEN RECOGNITION.'
SCIENCE V. 255 959 1992 ISSN 0036-8075
Sequences
Amino Acid Sequence:
DIVMTQSPSSLTVTAGEKVTMSCTSSQSLFNSGKQKNYLTWYQQKPGQPPKVLIYWASTR
ESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSNPLTFGGGTKLELKRADAAPT
VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS
MSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1him_M
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1him_J
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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