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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVKLVESGGGLVQPGGSLRLSCATS
1 - 25 25
CDR-H1
GFTFSDF
26 - 32 7
HFR2
YMEWVRQPPGKRLEWIAAS
33 - 51 19
CDR-H2
RNKGNKYT
52 - 59 8
HFR3
TEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
60 - 100 41
CDR-H3
NYYGSTWYFDV
101 - 111 11
HFR4
WGAGTTVTVSS
112 - 122 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC
123 - 222 100
222
Region Sequence Fragment Residues Length
HFR1
EVKLVESGGGLVQPGGSLRLSCATS
1 - 25 25
CDR-H1
GFTFSDFYME
26 - 35 10
HFR2
WVRQPPGKRLEWIA
36 - 49 14
CDR-H2
ASRNKGNKYTTE
50 - 61 12
HFR3
YSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
62 - 100 39
CDR-H3
NYYGSTWYFDV
101 - 111 11
HFR4
WGAGTTVTVSS
112 - 122 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC
123 - 222 100
222
Region Sequence Fragment Residues Length
HFR1
EVKLVESGGGLVQPGGSLRLSCATSGFTFS
1 - 30 30
CDR-H1
DFYME
31 - 35 5
HFR2
WVRQPPGKRLEWIA
36 - 49 14
CDR-H2
ASRNKGNKYTTEYSASVKG
50 - 68 19
HFR3
RFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
69 - 100 32
CDR-H3
NYYGSTWYFDV
101 - 111 11
HFR4
WGAGTTVTVSS
112 - 122 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC
123 - 222 100
222
Region Sequence Fragment Residues Length
HFR1
EVKLVESGGGLVQPGGSLRLSCATSGFTF
1 - 29 29
CDR-H1
SDFYME
30 - 35 6
HFR2
WVRQPPGKRLE
36 - 46 11
CDR-H2
WIAASRNKGNKYTTE
47 - 61 15
HFR3
YSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYC
62 - 98 37
CDR-H3
ARNYYGSTWYFD
99 - 110 12
HFR4
VWGAGTTVTVSS
111 - 122 12
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC
123 - 222 100
222
Region Sequence Fragment Residues Length
HFR1
EVKLVESGGGLVQPGGSLRLSCATS
1 - 25 25
CDR-H1
GFTFSDFY
26 - 33 8
HFR2
MEWVRQPPGKRLEWIAA
34 - 50 17
CDR-H2
SRNKGNKYTT
51 - 60 10
HFR3
EYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYC
61 - 98 38
CDR-H3
ARNYYGSTWYFDV
99 - 111 13
HFR4
WGAGTTVTVSS
112 - 122 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC
123 - 222 100
222
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVKLVESGGGLVQPGGSLRLSCATS-----
1 - 25 25
AbM
EVKLVESGGGLVQPGGSLRLSCATS-----
1 - 25 25
Kabat
EVKLVESGGGLVQPGGSLRLSCATSGFTFS
1 - 30 30
Contact
EVKLVESGGGLVQPGGSLRLSCATSGFTF-
1 - 29 29
IMGT
EVKLVESGGGLVQPGGSLRLSCATS-----
1 - 25 25
CDR-H1 Chothia
GFTFSDF---
26 - 32 7
AbM
GFTFSDFYME
26 - 35 10
Kabat
-----DFYME
31 - 35 5
Contact
----SDFYME
30 - 35 6
IMGT
GFTFSDFY--
26 - 33 8
HFR2 Chothia
YMEWVRQPPGKRLEWIAAS
33 - 51 19
AbM
---WVRQPPGKRLEWIA--
36 - 49 14
Kabat
---WVRQPPGKRLEWIA--
36 - 49 14
Contact
---WVRQPPGKRLE-----
36 - 46 11
IMGT
-MEWVRQPPGKRLEWIAA-
34 - 50 17
CDR-H2 Chothia
-----RNKGNKYT---------
52 - 59 8
AbM
---ASRNKGNKYTTE-------
50 - 61 12
Kabat
---ASRNKGNKYTTEYSASVKG
50 - 68 19
Contact
WIAASRNKGNKYTTE-------
47 - 61 15
IMGT
----SRNKGNKYTT--------
51 - 60 10
HFR3 Chothia
TEYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
60 - 100 41
AbM
--YSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
62 - 100 39
Kabat
---------RFIVSRDTSQSILYLQMNALRAEDTAIYYCAR
69 - 100 32
Contact
--YSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYC--
62 - 98 37
IMGT
-EYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYC--
61 - 98 38
CDR-H3 Chothia
--NYYGSTWYFDV
101 - 111 11
AbM
--NYYGSTWYFDV
101 - 111 11
Kabat
--NYYGSTWYFDV
101 - 111 11
Contact
ARNYYGSTWYFD-
99 - 110 12
IMGT
ARNYYGSTWYFDV
99 - 111 13
HFR4 Chothia
-WGAGTTVTVSS
112 - 122 11
AbM
-WGAGTTVTVSS
112 - 122 11
Kabat
-WGAGTTVTVSS
112 - 122 11
Contact
VWGAGTTVTVSS
111 - 122 12
IMGT
-WGAGTTVTVSS
112 - 122 11
Humanness

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Accession & Annotations
Accession 2mcp_H
Source PDB  2mcp  Submitted 15-OCT-1984  Updated 08-FEB-2017
Name
REFINED CRYSTAL STRUCTURE OF THE MC/PC603 FAB-PHOSPHOCHOLINE COMPLEX AT 3.1 ANGSTROMS RESOLUTION
Organism
Mus musculus
Chain Type Heavy
Pairing 2mcp_L
Identical Protein Sequences PDB: 1mcp_H
References
PADLAN A., COHEN H., DAVIES R.
'REFINED CRYSTAL STRUCTURE OF THE MC/PC603 FAB-PHOSPHOCHOLINE COMPLEX AT 3.1 ANGSTROMS RESOLUTION'
TO BE PUBLISHED
Sequences
Amino Acid Sequence:
EVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPPGKRLEWIAASRNKGNKYTT
EYSASVKGRFIVSRDTSQSILYLQMNALRAEDTAIYYCARNYYGSTWYFDVWGAGTTVTV
SSESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALA
SGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
2mcp_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2mcp_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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