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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVKLDETGGGLVQPGRPMKLSCVAS
1 - 25 25
CDR-H1
GFTFSDY
26 - 32 7
HFR2
WMNWVRQSPEKGLEWVAQI
33 - 51 19
CDR-H2
RNKPYNYE
52 - 59 8
HFR3
TYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTG
60 - 100 41
CDR-H3
SYYGMDY
101 - 107 7
HFR4
WGQGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
119 - 216 98
216
Region Sequence Fragment Residues Length
HFR1
EVKLDETGGGLVQPGRPMKLSCVAS
1 - 25 25
CDR-H1
GFTFSDYWMN
26 - 35 10
HFR2
WVRQSPEKGLEWVA
36 - 49 14
CDR-H2
QIRNKPYNYETY
50 - 61 12
HFR3
YSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTG
62 - 100 39
CDR-H3
SYYGMDY
101 - 107 7
HFR4
WGQGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
119 - 216 98
216
Region Sequence Fragment Residues Length
HFR1
EVKLDETGGGLVQPGRPMKLSCVASGFTFS
1 - 30 30
CDR-H1
DYWMN
31 - 35 5
HFR2
WVRQSPEKGLEWVA
36 - 49 14
CDR-H2
QIRNKPYNYETYYSDSVKG
50 - 68 19
HFR3
RFTISRDDSKSSVYLQMNNLRVEDMGIYYCTG
69 - 100 32
CDR-H3
SYYGMDY
101 - 107 7
HFR4
WGQGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
119 - 216 98
216
Region Sequence Fragment Residues Length
HFR1
EVKLDETGGGLVQPGRPMKLSCVASGFTF
1 - 29 29
CDR-H1
SDYWMN
30 - 35 6
HFR2
WVRQSPEKGLE
36 - 46 11
CDR-H2
WVAQIRNKPYNYETY
47 - 61 15
HFR3
YSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYC
62 - 98 37
CDR-H3
TGSYYGMD
99 - 106 8
HFR4
YWGQGTSVTVSS
107 - 118 12
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
119 - 216 98
216
Region Sequence Fragment Residues Length
HFR1
EVKLDETGGGLVQPGRPMKLSCVAS
1 - 25 25
CDR-H1
GFTFSDYW
26 - 33 8
HFR2
MNWVRQSPEKGLEWVAQ
34 - 50 17
CDR-H2
IRNKPYNYET
51 - 60 10
HFR3
YYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYC
61 - 98 38
CDR-H3
TGSYYGMDY
99 - 107 9
HFR4
WGQGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE
119 - 216 98
216
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVKLDETGGGLVQPGRPMKLSCVAS-----
1 - 25 25
AbM
EVKLDETGGGLVQPGRPMKLSCVAS-----
1 - 25 25
Kabat
EVKLDETGGGLVQPGRPMKLSCVASGFTFS
1 - 30 30
Contact
EVKLDETGGGLVQPGRPMKLSCVASGFTF-
1 - 29 29
IMGT
EVKLDETGGGLVQPGRPMKLSCVAS-----
1 - 25 25
CDR-H1 Chothia
GFTFSDY---
26 - 32 7
AbM
GFTFSDYWMN
26 - 35 10
Kabat
-----DYWMN
31 - 35 5
Contact
----SDYWMN
30 - 35 6
IMGT
GFTFSDYW--
26 - 33 8
HFR2 Chothia
WMNWVRQSPEKGLEWVAQI
33 - 51 19
AbM
---WVRQSPEKGLEWVA--
36 - 49 14
Kabat
---WVRQSPEKGLEWVA--
36 - 49 14
Contact
---WVRQSPEKGLE-----
36 - 46 11
IMGT
-MNWVRQSPEKGLEWVAQ-
34 - 50 17
CDR-H2 Chothia
-----RNKPYNYE---------
52 - 59 8
AbM
---QIRNKPYNYETY-------
50 - 61 12
Kabat
---QIRNKPYNYETYYSDSVKG
50 - 68 19
Contact
WVAQIRNKPYNYETY-------
47 - 61 15
IMGT
----IRNKPYNYET--------
51 - 60 10
HFR3 Chothia
TYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTG
60 - 100 41
AbM
--YSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTG
62 - 100 39
Kabat
---------RFTISRDDSKSSVYLQMNNLRVEDMGIYYCTG
69 - 100 32
Contact
--YSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYC--
62 - 98 37
IMGT
-YYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYC--
61 - 98 38
CDR-H3 Chothia
--SYYGMDY
101 - 107 7
AbM
--SYYGMDY
101 - 107 7
Kabat
--SYYGMDY
101 - 107 7
Contact
TGSYYGMD-
99 - 106 8
IMGT
TGSYYGMDY
99 - 107 9
HFR4 Chothia
-WGQGTSVTVSS
108 - 118 11
AbM
-WGQGTSVTVSS
108 - 118 11
Kabat
-WGQGTSVTVSS
108 - 118 11
Contact
YWGQGTSVTVSS
107 - 118 12
IMGT
-WGQGTSVTVSS
108 - 118 11
Humanness

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Accession & Annotations
Accession 4fab_H
Source PDB  4fab  Submitted 10-APR-1989  Updated 27-SEP-2017
Name
THREE-DIMENSIONAL STRUCTURE OF A FLUORESCEIN-FAB COMPLEX CRYSTALLIZED IN 2-METHYL-2,4-PENTANEDIOL
Organism
Mus musculus
Chain Type Heavy
Pairing 4fab_L
Identical Protein Sequences None
References
HERRON N., HE M., MASON L., VOSS JR W., EDMUNDSON B.
'THREE-DIMENSIONAL STRUCTURE OF A FLUORESCEIN-FAB COMPLEX CRYSTALLIZED IN 2-METHYL-2,4-PENTANEDIOL.'
PROTEINS V. 5 271 1989 ISSN 0887-3585
Sequences
Amino Acid Sequence:
EVKLDETGGGLVQPGRPMKLSCVASGFTFSDYWMNWVRQSPEKGLEWVAQIRNKPYNYET
YYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDMGIYYCTGSYYGMDYWGQGTSVTVSSAK
TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLY
TLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIE

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
4fab_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
4fab_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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