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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
NIVMTQSPKSMSMSVGERVTLTC
1 - 23 23
CDR-L1
KASENVVTYVS
24 - 34 11
LFR2
WYQQKPEQSPKLLIY
35 - 49 15
CDR-L2
GASNRYT
50 - 56 7
LFR3
GVPDRFTGSGSATDFTLTISSVQAEDLADYHC
57 - 88 32
CDR-L3
GQGNSYPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 213 104
213
Region Sequence Fragment Residues Length
LFR1
NIVMTQSPKSMSMSVGERVTLTC
1 - 23 23
CDR-L1
KASENVVTYVS
24 - 34 11
LFR2
WYQQKPEQSPKLLIY
35 - 49 15
CDR-L2
GASNRYT
50 - 56 7
LFR3
GVPDRFTGSGSATDFTLTISSVQAEDLADYHC
57 - 88 32
CDR-L3
GQGNSYPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 213 104
213
Region Sequence Fragment Residues Length
LFR1
NIVMTQSPKSMSMSVGERVTLTC
1 - 23 23
CDR-L1
KASENVVTYVS
24 - 34 11
LFR2
WYQQKPEQSPKLLIY
35 - 49 15
CDR-L2
GASNRYT
50 - 56 7
LFR3
GVPDRFTGSGSATDFTLTISSVQAEDLADYHC
57 - 88 32
CDR-L3
GQGNSYPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 213 104
213
Region Sequence Fragment Residues Length
LFR1
NIVMTQSPKSMSMSVGERVTLTCKASENV
1 - 29 29
CDR-L1
VTYVSWY
30 - 36 7
LFR2
QQKPEQSPK
37 - 45 9
CDR-L2
LLIYGASNRY
46 - 55 10
LFR3
TGVPDRFTGSGSATDFTLTISSVQAEDLADYHC
56 - 88 33
CDR-L3
GQGNSYPY
89 - 96 8
LFR4
TFGGGTKLEIKRA
97 - 109 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 213 104
213
Region Sequence Fragment Residues Length
LFR1
NIVMTQSPKSMSMSVGERVTLTCKAS
1 - 26 26
CDR-L1
ENVVTY
27 - 32 6
LFR2
VSWYQQKPEQSPKLLIY
33 - 49 17
CDR-L2
GA
50 - 51 2
LFR3
SNRYTGVPDRFTGSGSATDFTLTISSVQAEDLADYHC
52 - 88 37
CDR-L3
GQGNSYPYT
89 - 97 9
LFR4
FGGGTKLEIKRA
98 - 109 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
110 - 213 104
213
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
NIVMTQSPKSMSMSVGERVTLTC------
1 - 23 23
AbM
NIVMTQSPKSMSMSVGERVTLTC------
1 - 23 23
Kabat
NIVMTQSPKSMSMSVGERVTLTC------
1 - 23 23
Contact
NIVMTQSPKSMSMSVGERVTLTCKASENV
1 - 29 29
IMGT
NIVMTQSPKSMSMSVGERVTLTCKAS---
1 - 26 26
CDR-L1 Chothia
KASENVVTYVS--
24 - 34 11
AbM
KASENVVTYVS--
24 - 34 11
Kabat
KASENVVTYVS--
24 - 34 11
Contact
------VTYVSWY
30 - 36 7
IMGT
---ENVVTY----
27 - 32 6
LFR2 Chothia
--WYQQKPEQSPKLLIY
35 - 49 15
AbM
--WYQQKPEQSPKLLIY
35 - 49 15
Kabat
--WYQQKPEQSPKLLIY
35 - 49 15
Contact
----QQKPEQSPK----
37 - 45 9
IMGT
VSWYQQKPEQSPKLLIY
33 - 49 17
CDR-L2 Chothia
----GASNRYT
50 - 56 7
AbM
----GASNRYT
50 - 56 7
Kabat
----GASNRYT
50 - 56 7
Contact
LLIYGASNRY-
46 - 55 10
IMGT
----GA-----
50 - 51 2
LFR3 Chothia
-----GVPDRFTGSGSATDFTLTISSVQAEDLADYHC
57 - 88 32
AbM
-----GVPDRFTGSGSATDFTLTISSVQAEDLADYHC
57 - 88 32
Kabat
-----GVPDRFTGSGSATDFTLTISSVQAEDLADYHC
57 - 88 32
Contact
----TGVPDRFTGSGSATDFTLTISSVQAEDLADYHC
56 - 88 33
IMGT
SNRYTGVPDRFTGSGSATDFTLTISSVQAEDLADYHC
52 - 88 37
CDR-L3 Chothia
GQGNSYPYT
89 - 97 9
AbM
GQGNSYPYT
89 - 97 9
Kabat
GQGNSYPYT
89 - 97 9
Contact
GQGNSYPY-
89 - 96 8
IMGT
GQGNSYPYT
89 - 97 9
LFR4 Chothia
-FGGGTKLEIKRA
98 - 109 12
AbM
-FGGGTKLEIKRA
98 - 109 12
Kabat
-FGGGTKLEIKRA
98 - 109 12
Contact
TFGGGTKLEIKRA
97 - 109 13
IMGT
-FGGGTKLEIKRA
98 - 109 12
Humanness

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Accession & Annotations
Accession 1igc_L
Source PDB  1igc  Submitted 05-AUG-1994  Updated 24-FEB-2009
Name
IGG1 FAB FRAGMENT (MOPC21) COMPLEX WITH DOMAIN III OF PROTEIN G FROM STREPTOCOCCUS
Organism
Mus musculus
Chain Type Light
Pairing 1igc_H
Identical Protein Sequences None
References
DERRICK P., WIGLEY B.
'THE THIRD IGG-BINDING DOMAIN FROM STREPTOCOCCAL PROTEIN G. AN ANALYSIS BY X-RAY CRYSTALLOGRAPHY OF THE STRUCTURE ALONE AND IN A COMPLEX WITH FAB.'
J.MOL.BIOL. V. 243 906 1994 ISSN 0022-2836
Sequences
Amino Acid Sequence:
NIVMTQSPKSMSMSVGERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPD
RFTGSGSATDFTLTISSVQAEDLADYHCGQGNSYPYTFGGGTKLEIKRADAAPTVSIFPP
SSEQLTSGGASVVCFLNNFYPKDINVKWKIDSERQNGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1igc_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1igc_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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