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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIELTQSPSSLSASLGGKVTITC
1 - 23 23
CDR-L1
KASQDIKKYIG
24 - 34 11
LFR2
WYQHKPGKGPRLLIH
35 - 49 15
CDR-L2
YTSTLLP
50 - 56 7
LFR3
GIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
57 - 88 32
CDR-L3
LQYYNLRT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
DIELTQSPSSLSASLGGKVTITC
1 - 23 23
CDR-L1
KASQDIKKYIG
24 - 34 11
LFR2
WYQHKPGKGPRLLIH
35 - 49 15
CDR-L2
YTSTLLP
50 - 56 7
LFR3
GIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
57 - 88 32
CDR-L3
LQYYNLRT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
DIELTQSPSSLSASLGGKVTITC
1 - 23 23
CDR-L1
KASQDIKKYIG
24 - 34 11
LFR2
WYQHKPGKGPRLLIH
35 - 49 15
CDR-L2
YTSTLLP
50 - 56 7
LFR3
GIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
57 - 88 32
CDR-L3
LQYYNLRT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
DIELTQSPSSLSASLGGKVTITCKASQDI
1 - 29 29
CDR-L1
KKYIGWY
30 - 36 7
LFR2
QHKPGKGPR
37 - 45 9
CDR-L2
LLIHYTSTLL
46 - 55 10
LFR3
PGIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
56 - 88 33
CDR-L3
LQYYNLR
89 - 95 7
LFR4
TFGGGTKLEIKRA
96 - 108 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
DIELTQSPSSLSASLGGKVTITCKAS
1 - 26 26
CDR-L1
QDIKKY
27 - 32 6
LFR2
IGWYQHKPGKGPRLLIH
33 - 49 17
CDR-L2
YT
50 - 51 2
LFR3
STLLPGIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
52 - 88 37
CDR-L3
LQYYNLRT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIELTQSPSSLSASLGGKVTITC------
1 - 23 23
AbM
DIELTQSPSSLSASLGGKVTITC------
1 - 23 23
Kabat
DIELTQSPSSLSASLGGKVTITC------
1 - 23 23
Contact
DIELTQSPSSLSASLGGKVTITCKASQDI
1 - 29 29
IMGT
DIELTQSPSSLSASLGGKVTITCKAS---
1 - 26 26
CDR-L1 Chothia
KASQDIKKYIG--
24 - 34 11
AbM
KASQDIKKYIG--
24 - 34 11
Kabat
KASQDIKKYIG--
24 - 34 11
Contact
------KKYIGWY
30 - 36 7
IMGT
---QDIKKY----
27 - 32 6
LFR2 Chothia
--WYQHKPGKGPRLLIH
35 - 49 15
AbM
--WYQHKPGKGPRLLIH
35 - 49 15
Kabat
--WYQHKPGKGPRLLIH
35 - 49 15
Contact
----QHKPGKGPR----
37 - 45 9
IMGT
IGWYQHKPGKGPRLLIH
33 - 49 17
CDR-L2 Chothia
----YTSTLLP
50 - 56 7
AbM
----YTSTLLP
50 - 56 7
Kabat
----YTSTLLP
50 - 56 7
Contact
LLIHYTSTLL-
46 - 55 10
IMGT
----YT-----
50 - 51 2
LFR3 Chothia
-----GIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
57 - 88 32
AbM
-----GIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
57 - 88 32
Kabat
-----GIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
57 - 88 32
Contact
----PGIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
56 - 88 33
IMGT
STLLPGIPSRFRGSGSGRDYSFSISNLEGGDIATYYC
52 - 88 37
CDR-L3 Chothia
LQYYNLRT
89 - 96 8
AbM
LQYYNLRT
89 - 96 8
Kabat
LQYYNLRT
89 - 96 8
Contact
LQYYNLR-
89 - 95 7
IMGT
LQYYNLRT
89 - 96 8
LFR4 Chothia
-FGGGTKLEIKRA
97 - 108 12
AbM
-FGGGTKLEIKRA
97 - 108 12
Kabat
-FGGGTKLEIKRA
97 - 108 12
Contact
TFGGGTKLEIKRA
96 - 108 13
IMGT
-FGGGTKLEIKRA
97 - 108 12
Humanness

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Accession & Annotations
Accession 1eap_A
Source PDB  1eap  Submitted 10-AUG-1994  Updated 24-FEB-2009
Name
CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE
Organism
Mus musculus
Chain Type Light
Pairing 1eap_B
Identical Protein Sequences None
References
ZHOU W., GUO J., HUANG W., SCANLAN S., FLETTERICK J.
'CRYSTAL STRUCTURE OF A CATALYTIC ANTIBODY WITH A SERINE PROTEASE ACTIVE SITE.'
SCIENCE V. 265 1059 1994 ISSN 0036-8075
Sequences
Amino Acid Sequence:
DIELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKGPRLLIHYTSTLLPGIPS
RFRGSGSGRDYSFSISNLEGGDIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPS
SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERAQGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1eap_B
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1eap_A
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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