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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPSLVKPSQTLSLTCSVT
1 - 25 25
CDR-H1
GDSITSD
26 - 32 7
HFR2
YWSWIRKFPGNRLEYMGYV
33 - 51 19
CDR-H2
SYSGS
52 - 56 5
HFR3
TYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN
57 - 97 41
CDR-H3
WDGDY
98 - 102 5
HFR4
WGQGTLVTVSA
103 - 113 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
114 - 215 102
215
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPSLVKPSQTLSLTCSVT
1 - 25 25
CDR-H1
GDSITSDYWS
26 - 35 10
HFR2
WIRKFPGNRLEYMG
36 - 49 14
CDR-H2
YVSYSGSTY
50 - 58 9
HFR3
YNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN
59 - 97 39
CDR-H3
WDGDY
98 - 102 5
HFR4
WGQGTLVTVSA
103 - 113 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
114 - 215 102
215
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPSLVKPSQTLSLTCSVTGDSIT
1 - 30 30
CDR-H1
SDYWS
31 - 35 5
HFR2
WIRKFPGNRLEYMG
36 - 49 14
CDR-H2
YVSYSGSTYYNPSLKS
50 - 65 16
HFR3
RISITRDTSKNQYYLDLNSVTTEDTATYYCAN
66 - 97 32
CDR-H3
WDGDY
98 - 102 5
HFR4
WGQGTLVTVSA
103 - 113 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
114 - 215 102
215
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPSLVKPSQTLSLTCSVTGDSI
1 - 29 29
CDR-H1
TSDYWS
30 - 35 6
HFR2
WIRKFPGNRLE
36 - 46 11
CDR-H2
YMGYVSYSGSTY
47 - 58 12
HFR3
YNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC
59 - 95 37
CDR-H3
ANWDGD
96 - 101 6
HFR4
YWGQGTLVTVSA
102 - 113 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
114 - 215 102
215
Region Sequence Fragment Residues Length
HFR1
DVQLQESGPSLVKPSQTLSLTCSVT
1 - 25 25
CDR-H1
GDSITSDY
26 - 33 8
HFR2
WSWIRKFPGNRLEYMGY
34 - 50 17
CDR-H2
VSYSGST
51 - 57 7
HFR3
YYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC
58 - 95 38
CDR-H3
ANWDGDY
96 - 102 7
HFR4
WGQGTLVTVSA
103 - 113 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
114 - 215 102
215
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
DVQLQESGPSLVKPSQTLSLTCSVT-----
1 - 25 25
AbM
DVQLQESGPSLVKPSQTLSLTCSVT-----
1 - 25 25
Kabat
DVQLQESGPSLVKPSQTLSLTCSVTGDSIT
1 - 30 30
Contact
DVQLQESGPSLVKPSQTLSLTCSVTGDSI-
1 - 29 29
IMGT
DVQLQESGPSLVKPSQTLSLTCSVT-----
1 - 25 25
CDR-H1 Chothia
GDSITSD---
26 - 32 7
AbM
GDSITSDYWS
26 - 35 10
Kabat
-----SDYWS
31 - 35 5
Contact
----TSDYWS
30 - 35 6
IMGT
GDSITSDY--
26 - 33 8
HFR2 Chothia
YWSWIRKFPGNRLEYMGYV
33 - 51 19
AbM
---WIRKFPGNRLEYMG--
36 - 49 14
Kabat
---WIRKFPGNRLEYMG--
36 - 49 14
Contact
---WIRKFPGNRLE-----
36 - 46 11
IMGT
-WSWIRKFPGNRLEYMGY-
34 - 50 17
CDR-H2 Chothia
-----SYSGS---------
52 - 56 5
AbM
---YVSYSGSTY-------
50 - 58 9
Kabat
---YVSYSGSTYYNPSLKS
50 - 65 16
Contact
YMGYVSYSGSTY-------
47 - 58 12
IMGT
----VSYSGST--------
51 - 57 7
HFR3 Chothia
TYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN
57 - 97 41
AbM
--YNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN
59 - 97 39
Kabat
---------RISITRDTSKNQYYLDLNSVTTEDTATYYCAN
66 - 97 32
Contact
--YNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC--
59 - 95 37
IMGT
-YYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC--
58 - 95 38
CDR-H3 Chothia
--WDGDY
98 - 102 5
AbM
--WDGDY
98 - 102 5
Kabat
--WDGDY
98 - 102 5
Contact
ANWDGD-
96 - 101 6
IMGT
ANWDGDY
96 - 102 7
HFR4 Chothia
-WGQGTLVTVSA
103 - 113 11
AbM
-WGQGTLVTVSA
103 - 113 11
Kabat
-WGQGTLVTVSA
103 - 113 11
Contact
YWGQGTLVTVSA
102 - 113 12
IMGT
-WGQGTLVTVSA
103 - 113 11
Humanness

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Accession & Annotations
Accession 3hfm_H
Source PDB  3hfm  Submitted 11-AUG-1988  Updated 24-FEB-2009
Name
STRUCTURE OF AN ANTIBODY-ANTIGEN COMPLEX. CRYSTAL STRUCTURE OF THE HY/HEL-10 FAB-LYSOZYME COMPLEX
Organism
Mus musculus
Chain Type Heavy
Pairing 3hfm_L
Identical Protein Sequences None
References
PADLAN A., SILVERTON W., SHERIFF S., COHEN H., SMITH-GILL J., DAVIES R.
'STRUCTURE OF AN ANTIBODY-ANTIGEN COMPLEX: CRYSTAL STRUCTURE OF THE HYHEL-10 FAB-LYSOZYME COMPLEX.'
PROC.NATL.ACAD.SCI.USA V. 86 5938 1989 ISSN 0027-8424
Sequences
Amino Acid Sequence:
DVQLQESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYN
PSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPS
VYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS
VTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
3hfm_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
3hfm_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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