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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGVELVRAGSSVKMSCKAS
1 - 25 25
CDR-H1
GYTFTSN
26 - 32 7
HFR2
GINWVKQRPGQGLEWIGYN
33 - 51 19
CDR-H2
NPGNGY
52 - 57 6
HFR3
IAYNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCAR
58 - 98 41
CDR-H3
SEYYGGSYKFDY
99 - 110 12
HFR4
WGQGTTLTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
122 - 222 101
222
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGVELVRAGSSVKMSCKAS
1 - 25 25
CDR-H1
GYTFTSNGIN
26 - 35 10
HFR2
WVKQRPGQGLEWIG
36 - 49 14
CDR-H2
YNNPGNGYIA
50 - 59 10
HFR3
YNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCAR
60 - 98 39
CDR-H3
SEYYGGSYKFDY
99 - 110 12
HFR4
WGQGTTLTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
122 - 222 101
222
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGVELVRAGSSVKMSCKASGYTFT
1 - 30 30
CDR-H1
SNGIN
31 - 35 5
HFR2
WVKQRPGQGLEWIG
36 - 49 14
CDR-H2
YNNPGNGYIAYNEKFKG
50 - 66 17
HFR3
KTTLTVDKSSSTAYMQLRSLTSEDSAVYFCAR
67 - 98 32
CDR-H3
SEYYGGSYKFDY
99 - 110 12
HFR4
WGQGTTLTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
122 - 222 101
222
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGVELVRAGSSVKMSCKASGYTF
1 - 29 29
CDR-H1
TSNGIN
30 - 35 6
HFR2
WVKQRPGQGLE
36 - 46 11
CDR-H2
WIGYNNPGNGYIA
47 - 59 13
HFR3
YNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFC
60 - 96 37
CDR-H3
ARSEYYGGSYKFD
97 - 109 13
HFR4
YWGQGTTLTVSS
110 - 121 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
122 - 222 101
222
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGVELVRAGSSVKMSCKAS
1 - 25 25
CDR-H1
GYTFTSNG
26 - 33 8
HFR2
INWVKQRPGQGLEWIGY
34 - 50 17
CDR-H2
NNPGNGYI
51 - 58 8
HFR3
AYNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFC
59 - 96 38
CDR-H3
ARSEYYGGSYKFDY
97 - 110 14
HFR4
WGQGTTLTVSS
111 - 121 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD
122 - 222 101
222
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVQLQQSGVELVRAGSSVKMSCKAS-----
1 - 25 25
AbM
EVQLQQSGVELVRAGSSVKMSCKAS-----
1 - 25 25
Kabat
EVQLQQSGVELVRAGSSVKMSCKASGYTFT
1 - 30 30
Contact
EVQLQQSGVELVRAGSSVKMSCKASGYTF-
1 - 29 29
IMGT
EVQLQQSGVELVRAGSSVKMSCKAS-----
1 - 25 25
CDR-H1 Chothia
GYTFTSN---
26 - 32 7
AbM
GYTFTSNGIN
26 - 35 10
Kabat
-----SNGIN
31 - 35 5
Contact
----TSNGIN
30 - 35 6
IMGT
GYTFTSNG--
26 - 33 8
HFR2 Chothia
GINWVKQRPGQGLEWIGYN
33 - 51 19
AbM
---WVKQRPGQGLEWIG--
36 - 49 14
Kabat
---WVKQRPGQGLEWIG--
36 - 49 14
Contact
---WVKQRPGQGLE-----
36 - 46 11
IMGT
-INWVKQRPGQGLEWIGY-
34 - 50 17
CDR-H2 Chothia
-----NPGNGY---------
52 - 57 6
AbM
---YNNPGNGYIA-------
50 - 59 10
Kabat
---YNNPGNGYIAYNEKFKG
50 - 66 17
Contact
WIGYNNPGNGYIA-------
47 - 59 13
IMGT
----NNPGNGYI--------
51 - 58 8
HFR3 Chothia
IAYNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCAR
58 - 98 41
AbM
--YNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCAR
60 - 98 39
Kabat
---------KTTLTVDKSSSTAYMQLRSLTSEDSAVYFCAR
67 - 98 32
Contact
--YNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFC--
60 - 96 37
IMGT
-AYNEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFC--
59 - 96 38
CDR-H3 Chothia
--SEYYGGSYKFDY
99 - 110 12
AbM
--SEYYGGSYKFDY
99 - 110 12
Kabat
--SEYYGGSYKFDY
99 - 110 12
Contact
ARSEYYGGSYKFD-
97 - 109 13
IMGT
ARSEYYGGSYKFDY
97 - 110 14
HFR4 Chothia
-WGQGTTLTVSS
111 - 121 11
AbM
-WGQGTTLTVSS
111 - 121 11
Kabat
-WGQGTTLTVSS
111 - 121 11
Contact
YWGQGTTLTVSS
110 - 121 12
IMGT
-WGQGTTLTVSS
111 - 121 11
Humanness

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Accession & Annotations
Accession 6fab_H
Source PDB  6fab  Submitted 17-JAN-1991  Updated 25-AUG-2009
Name
THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P- AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN
Organism
Mus musculus
Chain Type Heavy
Pairing 6fab_L
Identical Protein Sequences None
References
STRONG K., CAMPBELL R., ROSE R., PETSKO A., SHARON J., MARGOLIES N.
'THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P-AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN.'
BIOCHEMISTRY V. 30 3739 1991 ISSN 0006-2960
Sequences
Amino Acid Sequence:
EVQLQQSGVELVRAGSSVKMSCKASGYTFTSNGINWVKQRPGQGLEWIGYNNPGNGYIAY
NEKFKGKTTLTVDKSSSTAYMQLRSLTSEDSAVYFCARSEYYGGSYKFDYWGQGTTLTVS
SAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQS
DLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRD

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
6fab_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
6fab_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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