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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
QSVLTQPPSASGTPGQRVTISC
1 - 22 22
CDR-L1
SGTSSNIGSSTVN
23 - 35 13
LFR2
WYQQLPGMAPKLLIY
36 - 50 15
CDR-L2
RDAMRPS
51 - 57 7
LFR3
GVPDRFSGSKSGASASLAIGGLQSEDETDYYC
58 - 89 32
CDR-L3
AAWDVSLNAYV
90 - 100 11
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
QSVLTQPPSASGTPGQRVTISC
1 - 22 22
CDR-L1
SGTSSNIGSSTVN
23 - 35 13
LFR2
WYQQLPGMAPKLLIY
36 - 50 15
CDR-L2
RDAMRPS
51 - 57 7
LFR3
GVPDRFSGSKSGASASLAIGGLQSEDETDYYC
58 - 89 32
CDR-L3
AAWDVSLNAYV
90 - 100 11
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
QSVLTQPPSASGTPGQRVTISC
1 - 22 22
CDR-L1
SGTSSNIGSSTVN
23 - 35 13
LFR2
WYQQLPGMAPKLLIY
36 - 50 15
CDR-L2
RDAMRPS
51 - 57 7
LFR3
GVPDRFSGSKSGASASLAIGGLQSEDETDYYC
58 - 89 32
CDR-L3
AAWDVSLNAYV
90 - 100 11
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
QSVLTQPPSASGTPGQRVTISCSGTSSN
1 - 28 28
CDR-L1
IGSSTVNWY
29 - 37 9
LFR2
QQLPGMAPK
38 - 46 9
CDR-L2
LLIYRDAMRP
47 - 56 10
LFR3
SGVPDRFSGSKSGASASLAIGGLQSEDETDYYC
57 - 89 33
CDR-L3
AAWDVSLNAY
90 - 99 10
LFR4
VFGTGTKVTVLGQP
100 - 113 14
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Sequence Fragment Residues Length
LFR1
QSVLTQPPSASGTPGQRVTISCSGT
1 - 25 25
CDR-L1
SSNIGSST
26 - 33 8
LFR2
VNWYQQLPGMAPKLLIY
34 - 50 17
CDR-L2
RD
51 - 52 2
LFR3
AMRPSGVPDRFSGSKSGASASLAIGGLQSEDETDYYC
53 - 89 37
CDR-L3
AAWDVSLNAYV
90 - 100 11
LFR4
FGTGTKVTVLGQP
101 - 113 13
Tail
KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
114 - 216 103
216
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
QSVLTQPPSASGTPGQRVTISC------
1 - 22 22
AbM
QSVLTQPPSASGTPGQRVTISC------
1 - 22 22
Kabat
QSVLTQPPSASGTPGQRVTISC------
1 - 22 22
Contact
QSVLTQPPSASGTPGQRVTISCSGTSSN
1 - 28 28
IMGT
QSVLTQPPSASGTPGQRVTISCSGT---
1 - 25 25
CDR-L1 Chothia
SGTSSNIGSSTVN--
23 - 35 13
AbM
SGTSSNIGSSTVN--
23 - 35 13
Kabat
SGTSSNIGSSTVN--
23 - 35 13
Contact
------IGSSTVNWY
29 - 37 9
IMGT
---SSNIGSST----
26 - 33 8
LFR2 Chothia
--WYQQLPGMAPKLLIY
36 - 50 15
AbM
--WYQQLPGMAPKLLIY
36 - 50 15
Kabat
--WYQQLPGMAPKLLIY
36 - 50 15
Contact
----QQLPGMAPK----
38 - 46 9
IMGT
VNWYQQLPGMAPKLLIY
34 - 50 17
CDR-L2 Chothia
----RDAMRPS
51 - 57 7
AbM
----RDAMRPS
51 - 57 7
Kabat
----RDAMRPS
51 - 57 7
Contact
LLIYRDAMRP-
47 - 56 10
IMGT
----RD-----
51 - 52 2
LFR3 Chothia
-----GVPDRFSGSKSGASASLAIGGLQSEDETDYYC
58 - 89 32
AbM
-----GVPDRFSGSKSGASASLAIGGLQSEDETDYYC
58 - 89 32
Kabat
-----GVPDRFSGSKSGASASLAIGGLQSEDETDYYC
58 - 89 32
Contact
----SGVPDRFSGSKSGASASLAIGGLQSEDETDYYC
57 - 89 33
IMGT
AMRPSGVPDRFSGSKSGASASLAIGGLQSEDETDYYC
53 - 89 37
CDR-L3 Chothia
AAWDVSLNAYV
90 - 100 11
AbM
AAWDVSLNAYV
90 - 100 11
Kabat
AAWDVSLNAYV
90 - 100 11
Contact
AAWDVSLNAY-
90 - 99 10
IMGT
AAWDVSLNAYV
90 - 100 11
LFR4 Chothia
-FGTGTKVTVLGQP
101 - 113 13
AbM
-FGTGTKVTVLGQP
101 - 113 13
Kabat
-FGTGTKVTVLGQP
101 - 113 13
Contact
VFGTGTKVTVLGQP
100 - 113 14
IMGT
-FGTGTKVTVLGQP
101 - 113 13
Humanness

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Accession & Annotations
Accession 2fb4_L
Source PDB  2fb4  Submitted 18-APR-1989  Updated 24-FEB-2009
Name
DIR PRIMAERSTRUKTUR DES KRISTALLISIERBAREN MONOKLONALEN IMMUNOGLOBULINS IGG1 KOL. II. AMINOSAEURESEQUENZ DER L- KETTE, LAMBDA-TYP, SUBGRUPPE I (GERMAN)
Organism
Homo sapiens
Human Subgroup Lambda Light chain subgroup I
Chain Type Light
Pairing 2fb4_H
Identical Protein Sequences PDB: 2ig2_L
References
KRATZIN D., PALM W., STANGEL M., SCHMIDT E., FRIEDRICH J., HILSCHMANN N.
'THE PRIMARY STRUCTURE OF CRYSTALLIZABLE MONOCLONAL IMMUNOGLOBULIN IGG1 KOL. II. AMINO ACID SEQUENCE OF THE L-CHAIN, GAMMA-TYPE, SUBGROUP I'
BIOL.CHEM.HOPPE-SEYLER V. 370 263 1989 ISSN 0177-3593
Sequences
Amino Acid Sequence:
QSVLTQPPSASGTPGQRVTISCSGTSSNIGSSTVNWYQQLPGMAPKLLIYRDAMRPSGVP
DRFSGSKSGASASLAIGGLQSEDETDYYCAAWDVSLNAYVFGTGTKVTVLGQPKANPTVT
LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASS
YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
2fb4_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2fb4_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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