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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELVRPGASVKLSCTTS
1 - 25 25
CDR-H1
GFNIKDI
26 - 32 7
HFR2
YIHWVKQRPEQGLEWIGRL
33 - 51 19
CDR-H2
DPANGY
52 - 57 6
HFR3
TKYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDG
58 - 98 41
CDR-H3
YYSYYDMDY
99 - 107 9
HFR4
WGPGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELVRPGASVKLSCTTS
1 - 25 25
CDR-H1
GFNIKDIYIH
26 - 35 10
HFR2
WVKQRPEQGLEWIG
36 - 49 14
CDR-H2
RLDPANGYTK
50 - 59 10
HFR3
YDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDG
60 - 98 39
CDR-H3
YYSYYDMDY
99 - 107 9
HFR4
WGPGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELVRPGASVKLSCTTSGFNIK
1 - 30 30
CDR-H1
DIYIH
31 - 35 5
HFR2
WVKQRPEQGLEWIG
36 - 49 14
CDR-H2
RLDPANGYTKYDPKFQG
50 - 66 17
HFR3
KATITVDTSSNTAYLHLSSLTSEDTAVYYCDG
67 - 98 32
CDR-H3
YYSYYDMDY
99 - 107 9
HFR4
WGPGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELVRPGASVKLSCTTSGFNI
1 - 29 29
CDR-H1
KDIYIH
30 - 35 6
HFR2
WVKQRPEQGLE
36 - 46 11
CDR-H2
WIGRLDPANGYTK
47 - 59 13
HFR3
YDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYC
60 - 96 37
CDR-H3
DGYYSYYDMD
97 - 106 10
HFR4
YWGPGTSVTVSS
107 - 118 12
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
119 - 218 100
218
Region Sequence Fragment Residues Length
HFR1
EVQLQQSGAELVRPGASVKLSCTTS
1 - 25 25
CDR-H1
GFNIKDIY
26 - 33 8
HFR2
IHWVKQRPEQGLEWIGR
34 - 50 17
CDR-H2
LDPANGYT
51 - 58 8
HFR3
KYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYC
59 - 96 38
CDR-H3
DGYYSYYDMDY
97 - 107 11
HFR4
WGPGTSVTVSS
108 - 118 11
Tail
AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
119 - 218 100
218
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVQLQQSGAELVRPGASVKLSCTTS-----
1 - 25 25
AbM
EVQLQQSGAELVRPGASVKLSCTTS-----
1 - 25 25
Kabat
EVQLQQSGAELVRPGASVKLSCTTSGFNIK
1 - 30 30
Contact
EVQLQQSGAELVRPGASVKLSCTTSGFNI-
1 - 29 29
IMGT
EVQLQQSGAELVRPGASVKLSCTTS-----
1 - 25 25
CDR-H1 Chothia
GFNIKDI---
26 - 32 7
AbM
GFNIKDIYIH
26 - 35 10
Kabat
-----DIYIH
31 - 35 5
Contact
----KDIYIH
30 - 35 6
IMGT
GFNIKDIY--
26 - 33 8
HFR2 Chothia
YIHWVKQRPEQGLEWIGRL
33 - 51 19
AbM
---WVKQRPEQGLEWIG--
36 - 49 14
Kabat
---WVKQRPEQGLEWIG--
36 - 49 14
Contact
---WVKQRPEQGLE-----
36 - 46 11
IMGT
-IHWVKQRPEQGLEWIGR-
34 - 50 17
CDR-H2 Chothia
-----DPANGY---------
52 - 57 6
AbM
---RLDPANGYTK-------
50 - 59 10
Kabat
---RLDPANGYTKYDPKFQG
50 - 66 17
Contact
WIGRLDPANGYTK-------
47 - 59 13
IMGT
----LDPANGYT--------
51 - 58 8
HFR3 Chothia
TKYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDG
58 - 98 41
AbM
--YDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDG
60 - 98 39
Kabat
---------KATITVDTSSNTAYLHLSSLTSEDTAVYYCDG
67 - 98 32
Contact
--YDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYC--
60 - 96 37
IMGT
-KYDPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYC--
59 - 96 38
CDR-H3 Chothia
--YYSYYDMDY
99 - 107 9
AbM
--YYSYYDMDY
99 - 107 9
Kabat
--YYSYYDMDY
99 - 107 9
Contact
DGYYSYYDMD-
97 - 106 10
IMGT
DGYYSYYDMDY
97 - 107 11
HFR4 Chothia
-WGPGTSVTVSS
108 - 118 11
AbM
-WGPGTSVTVSS
108 - 118 11
Kabat
-WGPGTSVTVSS
108 - 118 11
Contact
YWGPGTSVTVSS
107 - 118 12
IMGT
-WGPGTSVTVSS
108 - 118 11
Humanness

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Accession & Annotations
Accession 1bbd_H
Source PDB  1bbd  Submitted 05-MAY-1992  Updated 05-FEB-2014
Name
THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2
Organism
Mus musculus
Chain Type Heavy
Pairing 1bbd_L
Identical Protein Sequences PDB: 1a3r_H
References
TORMO J., STADLER E., SKERN T., AUER H., KANZLER O., BETZEL C., BLAAS D., FITA I.
'THREE-DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2.'
PROTEIN SCI. V. 1 1154 1992 ISSN 0961-8368
Sequences
Amino Acid Sequence:
EVQLQQSGAELVRPGASVKLSCTTSGFNIKDIYIHWVKQRPEQGLEWIGRLDPANGYTKY
DPKFQGKATITVDTSSNTAYLHLSSLTSEDTAVYYCDGYYSYYDMDYWGPGTSVTVSSAK
TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLY
TLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
1bbd_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1bbd_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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