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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
ENVLTQSPAIMSASPGEKVTMAC
1 - 23 23
CDR-L1
RASSSVSSTYLH
24 - 35 12
LFR2
WYQQKSGASPKLLIY
36 - 50 15
CDR-L2
STSNLAS
51 - 57 7
LFR3
GVPARFSGSGSGTSYSLTISSVEAEDAATYYC
58 - 89 32
CDR-L3
QQYSGYPLT
90 - 98 9
LFR4
FGAGTKLELKRA
99 - 110 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
111 - 215 105
215
Region Sequence Fragment Residues Length
LFR1
ENVLTQSPAIMSASPGEKVTMAC
1 - 23 23
CDR-L1
RASSSVSSTYLH
24 - 35 12
LFR2
WYQQKSGASPKLLIY
36 - 50 15
CDR-L2
STSNLAS
51 - 57 7
LFR3
GVPARFSGSGSGTSYSLTISSVEAEDAATYYC
58 - 89 32
CDR-L3
QQYSGYPLT
90 - 98 9
LFR4
FGAGTKLELKRA
99 - 110 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
111 - 215 105
215
Region Sequence Fragment Residues Length
LFR1
ENVLTQSPAIMSASPGEKVTMAC
1 - 23 23
CDR-L1
RASSSVSSTYLH
24 - 35 12
LFR2
WYQQKSGASPKLLIY
36 - 50 15
CDR-L2
STSNLAS
51 - 57 7
LFR3
GVPARFSGSGSGTSYSLTISSVEAEDAATYYC
58 - 89 32
CDR-L3
QQYSGYPLT
90 - 98 9
LFR4
FGAGTKLELKRA
99 - 110 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
111 - 215 105
215
Region Sequence Fragment Residues Length
LFR1
ENVLTQSPAIMSASPGEKVTMACRASSSV
1 - 29 29
CDR-L1
SSTYLHWY
30 - 37 8
LFR2
QQKSGASPK
38 - 46 9
CDR-L2
LLIYSTSNLA
47 - 56 10
LFR3
SGVPARFSGSGSGTSYSLTISSVEAEDAATYYC
57 - 89 33
CDR-L3
QQYSGYPL
90 - 97 8
LFR4
TFGAGTKLELKRA
98 - 110 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
111 - 215 105
215
Region Sequence Fragment Residues Length
LFR1
ENVLTQSPAIMSASPGEKVTMACRAS
1 - 26 26
CDR-L1
SSVSSTY
27 - 33 7
LFR2
LHWYQQKSGASPKLLIY
34 - 50 17
CDR-L2
ST
51 - 52 2
LFR3
SNLASGVPARFSGSGSGTSYSLTISSVEAEDAATYYC
53 - 89 37
CDR-L3
QQYSGYPLT
90 - 98 9
LFR4
FGAGTKLELKRA
99 - 110 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
111 - 215 105
215
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
ENVLTQSPAIMSASPGEKVTMAC------
1 - 23 23
AbM
ENVLTQSPAIMSASPGEKVTMAC------
1 - 23 23
Kabat
ENVLTQSPAIMSASPGEKVTMAC------
1 - 23 23
Contact
ENVLTQSPAIMSASPGEKVTMACRASSSV
1 - 29 29
IMGT
ENVLTQSPAIMSASPGEKVTMACRAS---
1 - 26 26
CDR-L1 Chothia
RASSSVSSTYLH--
24 - 35 12
AbM
RASSSVSSTYLH--
24 - 35 12
Kabat
RASSSVSSTYLH--
24 - 35 12
Contact
------SSTYLHWY
30 - 37 8
IMGT
---SSVSSTY----
27 - 33 7
LFR2 Chothia
--WYQQKSGASPKLLIY
36 - 50 15
AbM
--WYQQKSGASPKLLIY
36 - 50 15
Kabat
--WYQQKSGASPKLLIY
36 - 50 15
Contact
----QQKSGASPK----
38 - 46 9
IMGT
LHWYQQKSGASPKLLIY
34 - 50 17
CDR-L2 Chothia
----STSNLAS
51 - 57 7
AbM
----STSNLAS
51 - 57 7
Kabat
----STSNLAS
51 - 57 7
Contact
LLIYSTSNLA-
47 - 56 10
IMGT
----ST-----
51 - 52 2
LFR3 Chothia
-----GVPARFSGSGSGTSYSLTISSVEAEDAATYYC
58 - 89 32
AbM
-----GVPARFSGSGSGTSYSLTISSVEAEDAATYYC
58 - 89 32
Kabat
-----GVPARFSGSGSGTSYSLTISSVEAEDAATYYC
58 - 89 32
Contact
----SGVPARFSGSGSGTSYSLTISSVEAEDAATYYC
57 - 89 33
IMGT
SNLASGVPARFSGSGSGTSYSLTISSVEAEDAATYYC
53 - 89 37
CDR-L3 Chothia
QQYSGYPLT
90 - 98 9
AbM
QQYSGYPLT
90 - 98 9
Kabat
QQYSGYPLT
90 - 98 9
Contact
QQYSGYPL-
90 - 97 8
IMGT
QQYSGYPLT
90 - 98 9
LFR4 Chothia
-FGAGTKLELKRA
99 - 110 12
AbM
-FGAGTKLELKRA
99 - 110 12
Kabat
-FGAGTKLELKRA
99 - 110 12
Contact
TFGAGTKLELKRA
98 - 110 13
IMGT
-FGAGTKLELKRA
99 - 110 12
Humanness

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Accession & Annotations
Accession 1fig_L
Source PDB  1fig  Submitted 07-JAN-1994  Updated 25-AUG-2009
Name
ROUTES TO CATALYSIS: STRUCTURE OF A CATALYTIC ANTIBODY AND COMPARISON WITH ITS NATURAL COUNTERPART
Organism
Mus musculus
Chain Type Light
Pairing 1fig_H
Identical Protein Sequences None
References
HAYNES R., STURA A., HILVERT D., WILSON A.
'ROUTES TO CATALYSIS: STRUCTURE OF A CATALYTIC ANTIBODY AND COMPARISON WITH ITS NATURAL COUNTERPART.'
SCIENCE V. 263 646 1994 ISSN 0036-8075
Sequences
Amino Acid Sequence:
ENVLTQSPAIMSASPGEKVTMACRASSSVSSTYLHWYQQKSGASPKLLIYSTSNLASGVP
ARFSGSGSGTSYSLTISSVEAEDAATYYCQQYSGYPLTFGAGTKLELKRADAAPTVSIFP
PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTL
TLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
1fig_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1fig_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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