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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DIQMTQTTSSLSASLGDRVTISC
1 - 23 23
CDR-L1
RASQDISTYLN
24 - 34 11
LFR2
WYQQKPDGTVKLLIF
35 - 49 15
CDR-L2
YTSRLRS
50 - 56 7
LFR3
GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
CDR-L3
QQGSRIPPT
89 - 97 9
LFR4
FGGGTKLEILRAD
98 - 110 13
Tail
AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRAAC
111 - 214 104
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQTTSSLSASLGDRVTISC
1 - 23 23
CDR-L1
RASQDISTYLN
24 - 34 11
LFR2
WYQQKPDGTVKLLIF
35 - 49 15
CDR-L2
YTSRLRS
50 - 56 7
LFR3
GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
CDR-L3
QQGSRIPPT
89 - 97 9
LFR4
FGGGTKLEILRAD
98 - 110 13
Tail
AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRAAC
111 - 214 104
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQTTSSLSASLGDRVTISC
1 - 23 23
CDR-L1
RASQDISTYLN
24 - 34 11
LFR2
WYQQKPDGTVKLLIF
35 - 49 15
CDR-L2
YTSRLRS
50 - 56 7
LFR3
GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
CDR-L3
QQGSRIPPT
89 - 97 9
LFR4
FGGGTKLEILRAD
98 - 110 13
Tail
AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRAAC
111 - 214 104
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQTTSSLSASLGDRVTISCRASQDI
1 - 29 29
CDR-L1
STYLNWY
30 - 36 7
LFR2
QQKPDGTVK
37 - 45 9
CDR-L2
LLIFYTSRLR
46 - 55 10
LFR3
SGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
56 - 88 33
CDR-L3
QQGSRIPP
89 - 96 8
LFR4
TFGGGTKLEILRAD
97 - 110 14
Tail
AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRAAC
111 - 214 104
214
Region Sequence Fragment Residues Length
LFR1
DIQMTQTTSSLSASLGDRVTISCRAS
1 - 26 26
CDR-L1
QDISTY
27 - 32 6
LFR2
LNWYQQKPDGTVKLLIF
33 - 49 17
CDR-L2
YT
50 - 51 2
LFR3
SRLRSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
52 - 88 37
CDR-L3
QQGSRIPPT
89 - 97 9
LFR4
FGGGTKLEILRAD
98 - 110 13
Tail
AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKD
STYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRAAC
111 - 214 104
214
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIQMTQTTSSLSASLGDRVTISC------
1 - 23 23
AbM
DIQMTQTTSSLSASLGDRVTISC------
1 - 23 23
Kabat
DIQMTQTTSSLSASLGDRVTISC------
1 - 23 23
Contact
DIQMTQTTSSLSASLGDRVTISCRASQDI
1 - 29 29
IMGT
DIQMTQTTSSLSASLGDRVTISCRAS---
1 - 26 26
CDR-L1 Chothia
RASQDISTYLN--
24 - 34 11
AbM
RASQDISTYLN--
24 - 34 11
Kabat
RASQDISTYLN--
24 - 34 11
Contact
------STYLNWY
30 - 36 7
IMGT
---QDISTY----
27 - 32 6
LFR2 Chothia
--WYQQKPDGTVKLLIF
35 - 49 15
AbM
--WYQQKPDGTVKLLIF
35 - 49 15
Kabat
--WYQQKPDGTVKLLIF
35 - 49 15
Contact
----QQKPDGTVK----
37 - 45 9
IMGT
LNWYQQKPDGTVKLLIF
33 - 49 17
CDR-L2 Chothia
----YTSRLRS
50 - 56 7
AbM
----YTSRLRS
50 - 56 7
Kabat
----YTSRLRS
50 - 56 7
Contact
LLIFYTSRLR-
46 - 55 10
IMGT
----YT-----
50 - 51 2
LFR3 Chothia
-----GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
AbM
-----GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
Kabat
-----GVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
57 - 88 32
Contact
----SGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
56 - 88 33
IMGT
SRLRSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFC
52 - 88 37
CDR-L3 Chothia
QQGSRIPPT
89 - 97 9
AbM
QQGSRIPPT
89 - 97 9
Kabat
QQGSRIPPT
89 - 97 9
Contact
QQGSRIPP-
89 - 96 8
IMGT
QQGSRIPPT
89 - 97 9
LFR4 Chothia
-FGGGTKLEILRAD
98 - 110 13
AbM
-FGGGTKLEILRAD
98 - 110 13
Kabat
-FGGGTKLEILRAD
98 - 110 13
Contact
TFGGGTKLEILRAD
97 - 110 14
IMGT
-FGGGTKLEILRAD
98 - 110 13
Humanness

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Accession & Annotations
Accession 1ikf_L
Source PDB  1ikf  Submitted 09-DEC-1993  Updated 27-JUL-2011
Name
A CONFORMATION OF CYCLOSPORIN A IN AQUEOUS ENVIRONMENT REVEALED BY THE X-RAY STRUCTURE OF A CYCLOSPORIN-FAB COMPLEX
Organism
Homo sapiens
Human Subgroup Kappa Light chain subgroup I
Chain Type Light
Pairing 1ikf_H
Identical Protein Sequences None
References
ALTSCHUH D., VIX O., REES B., THIERRY C.
'A CONFORMATION OF CYCLOSPORIN A IN AQUEOUS ENVIRONMENT REVEALED BY THE X-RAY STRUCTURE OF A CYCLOSPORIN-FAB COMPLEX.'
SCIENCE V. 256 92 1992 ISSN 0036-8075
Sequences
Amino Acid Sequence:
DIQMTQTTSSLSASLGDRVTISCRASQDISTYLNWYQQKPDGTVKLLIFYTSRLRSGVPS
RFSGSGSGTDYSLTISNLEQEDIATYFCQQGSRIPPTFGGGTKLEILRADAAPTVSIFPP
SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLT
LTKDEYERHNSYTCEATHKTSTSPIVKSFNRAAC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


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Chains
1ikf_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1ikf_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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