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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
Leader
M
1 - 1 1
LFR1
DIVLTQSPAIMSASPGEKVTMTC
2 - 24 23
CDR-L1
SASSSVNYMY
25 - 34 10
LFR2
WYQQKSGTSPKRWIY
35 - 49 15
CDR-L2
DTSKLAS
50 - 56 7
LFR3
GVPVRFSGSGSGTSYSLTISSMETEDAATYYC
57 - 88 32
CDR-L3
QQWGRNPT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
109 - 211 103
211
Region Sequence Fragment Residues Length
Leader
M
1 - 1 1
LFR1
DIVLTQSPAIMSASPGEKVTMTC
2 - 24 23
CDR-L1
SASSSVNYMY
25 - 34 10
LFR2
WYQQKSGTSPKRWIY
35 - 49 15
CDR-L2
DTSKLAS
50 - 56 7
LFR3
GVPVRFSGSGSGTSYSLTISSMETEDAATYYC
57 - 88 32
CDR-L3
QQWGRNPT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
109 - 211 103
211
Region Sequence Fragment Residues Length
Leader
M
1 - 1 1
LFR1
DIVLTQSPAIMSASPGEKVTMTC
2 - 24 23
CDR-L1
SASSSVNYMY
25 - 34 10
LFR2
WYQQKSGTSPKRWIY
35 - 49 15
CDR-L2
DTSKLAS
50 - 56 7
LFR3
GVPVRFSGSGSGTSYSLTISSMETEDAATYYC
57 - 88 32
CDR-L3
QQWGRNPT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
109 - 211 103
211
Region Sequence Fragment Residues Length
Leader
M
1 - 1 1
LFR1
DIVLTQSPAIMSASPGEKVTMTCSASSSV
2 - 30 29
CDR-L1
NYMYWY
31 - 36 6
LFR2
QQKSGTSPK
37 - 45 9
CDR-L2
RWIYDTSKLA
46 - 55 10
LFR3
SGVPVRFSGSGSGTSYSLTISSMETEDAATYYC
56 - 88 33
CDR-L3
QQWGRNP
89 - 95 7
LFR4
TFGGGTKLEIKRA
96 - 108 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
109 - 211 103
211
Region Sequence Fragment Residues Length
Leader
M
1 - 1 1
LFR1
DIVLTQSPAIMSASPGEKVTMTCSAS
2 - 27 26
CDR-L1
SSVNY
28 - 32 5
LFR2
MYWYQQKSGTSPKRWIY
33 - 49 17
CDR-L2
DT
50 - 51 2
LFR3
SKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYC
52 - 88 37
CDR-L3
QQWGRNPT
89 - 96 8
LFR4
FGGGTKLEIKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN
109 - 211 103
211
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DIVLTQSPAIMSASPGEKVTMTC------
2 - 24 23
AbM
DIVLTQSPAIMSASPGEKVTMTC------
2 - 24 23
Kabat
DIVLTQSPAIMSASPGEKVTMTC------
2 - 24 23
Contact
DIVLTQSPAIMSASPGEKVTMTCSASSSV
2 - 30 29
IMGT
DIVLTQSPAIMSASPGEKVTMTCSAS---
2 - 27 26
CDR-L1 Chothia
SASSSVNYMY--
25 - 34 10
AbM
SASSSVNYMY--
25 - 34 10
Kabat
SASSSVNYMY--
25 - 34 10
Contact
------NYMYWY
31 - 36 6
IMGT
---SSVNY----
28 - 32 5
LFR2 Chothia
--WYQQKSGTSPKRWIY
35 - 49 15
AbM
--WYQQKSGTSPKRWIY
35 - 49 15
Kabat
--WYQQKSGTSPKRWIY
35 - 49 15
Contact
----QQKSGTSPK----
37 - 45 9
IMGT
MYWYQQKSGTSPKRWIY
33 - 49 17
CDR-L2 Chothia
----DTSKLAS
50 - 56 7
AbM
----DTSKLAS
50 - 56 7
Kabat
----DTSKLAS
50 - 56 7
Contact
RWIYDTSKLA-
46 - 55 10
IMGT
----DT-----
50 - 51 2
LFR3 Chothia
-----GVPVRFSGSGSGTSYSLTISSMETEDAATYYC
57 - 88 32
AbM
-----GVPVRFSGSGSGTSYSLTISSMETEDAATYYC
57 - 88 32
Kabat
-----GVPVRFSGSGSGTSYSLTISSMETEDAATYYC
57 - 88 32
Contact
----SGVPVRFSGSGSGTSYSLTISSMETEDAATYYC
56 - 88 33
IMGT
SKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYC
52 - 88 37
CDR-L3 Chothia
QQWGRNPT
89 - 96 8
AbM
QQWGRNPT
89 - 96 8
Kabat
QQWGRNPT
89 - 96 8
Contact
QQWGRNP-
89 - 95 7
IMGT
QQWGRNPT
89 - 96 8
LFR4 Chothia
-FGGGTKLEIKRA
97 - 108 12
AbM
-FGGGTKLEIKRA
97 - 108 12
Kabat
-FGGGTKLEIKRA
97 - 108 12
Contact
TFGGGTKLEIKRA
96 - 108 13
IMGT
-FGGGTKLEIKRA
97 - 108 12
Humanness

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Accession & Annotations
Accession 1yqv_L
Source PDB  1yqv  Submitted 02-FEB-2005  Updated 11-OCT-2017
Name
THE CRYSTAL STRUCTURE OF THE ANTIBODY FAB HYHEL5 COMPLEX WITH LYSOZYME AT 1.7A RESOLUTION
Organism
Mus musculus
Chain Type Light
Pairing 1yqv_H
Identical Protein Sequences None
References
COHEN H., SILVERTON W., PADLAN A., DYDA F., WIBBENMEYER A., WILLSON C., DAVIES R.
'WATER MOLECULES IN THE ANTIBODY-ANTIGEN INTERFACE OF THE STRUCTURE OF THE FAB HYHEL-5-LYSOZYME COMPLEX AT 1.7 A RESOLUTION: COMPARISON WITH RESULTS FROM ISOTHERMAL TITRATION CALORIMETRY.'
ACTA CRYSTALLOGR.,SECT.D V. 61 628 2005 ISSN 0907-4449
Sequences
Amino Acid Sequence:
MDIVLTQSPAIMSASPGEKVTMTCSASSSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPV
RFSGSGSGTSYSLTISSMETEDAATYYCQQWGRNPTFGGGTKLEIKRADAAPTVSIFPPS
SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRN

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
1yqv_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1yqv_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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