abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
SYELTQPPSVSVSPGQTARITC
1 - 22 22
CDR-L1
SANALPNQYAY
23 - 33 11
LFR2
WYQQKPGRAPVMVIY
34 - 48 15
CDR-L2
KDTQRPS
49 - 55 7
LFR3
GIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
56 - 87 32
CDR-L3
QAWDNSASI
88 - 96 9
LFR4
FGGGTKLTVLGQP
97 - 109 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
110 - 212 103
212
Region Sequence Fragment Residues Length
LFR1
SYELTQPPSVSVSPGQTARITC
1 - 22 22
CDR-L1
SANALPNQYAY
23 - 33 11
LFR2
WYQQKPGRAPVMVIY
34 - 48 15
CDR-L2
KDTQRPS
49 - 55 7
LFR3
GIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
56 - 87 32
CDR-L3
QAWDNSASI
88 - 96 9
LFR4
FGGGTKLTVLGQP
97 - 109 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
110 - 212 103
212
Region Sequence Fragment Residues Length
LFR1
SYELTQPPSVSVSPGQTARITC
1 - 22 22
CDR-L1
SANALPNQYAY
23 - 33 11
LFR2
WYQQKPGRAPVMVIY
34 - 48 15
CDR-L2
KDTQRPS
49 - 55 7
LFR3
GIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
56 - 87 32
CDR-L3
QAWDNSASI
88 - 96 9
LFR4
FGGGTKLTVLGQP
97 - 109 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
110 - 212 103
212
Region Sequence Fragment Residues Length
LFR1
SYELTQPPSVSVSPGQTARITCSANALP
1 - 28 28
CDR-L1
NQYAYWY
29 - 35 7
LFR2
QQKPGRAPV
36 - 44 9
CDR-L2
MVIYKDTQRP
45 - 54 10
LFR3
SGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
55 - 87 33
CDR-L3
QAWDNSAS
88 - 95 8
LFR4
IFGGGTKLTVLGQP
96 - 109 14
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
110 - 212 103
212
Region Sequence Fragment Residues Length
LFR1
SYELTQPPSVSVSPGQTARITCSAN
1 - 25 25
CDR-L1
ALPNQY
26 - 31 6
LFR2
AYWYQQKPGRAPVMVIY
32 - 48 17
CDR-L2
KD
49 - 50 2
LFR3
TQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
51 - 87 37
CDR-L3
QAWDNSASI
88 - 96 9
LFR4
FGGGTKLTVLGQP
97 - 109 13
Tail
KAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSN
NKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
110 - 212 103
212
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
SYELTQPPSVSVSPGQTARITC------
1 - 22 22
AbM
SYELTQPPSVSVSPGQTARITC------
1 - 22 22
Kabat
SYELTQPPSVSVSPGQTARITC------
1 - 22 22
Contact
SYELTQPPSVSVSPGQTARITCSANALP
1 - 28 28
IMGT
SYELTQPPSVSVSPGQTARITCSAN---
1 - 25 25
CDR-L1 Chothia
SANALPNQYAY--
23 - 33 11
AbM
SANALPNQYAY--
23 - 33 11
Kabat
SANALPNQYAY--
23 - 33 11
Contact
------NQYAYWY
29 - 35 7
IMGT
---ALPNQY----
26 - 31 6
LFR2 Chothia
--WYQQKPGRAPVMVIY
34 - 48 15
AbM
--WYQQKPGRAPVMVIY
34 - 48 15
Kabat
--WYQQKPGRAPVMVIY
34 - 48 15
Contact
----QQKPGRAPV----
36 - 44 9
IMGT
AYWYQQKPGRAPVMVIY
32 - 48 17
CDR-L2 Chothia
----KDTQRPS
49 - 55 7
AbM
----KDTQRPS
49 - 55 7
Kabat
----KDTQRPS
49 - 55 7
Contact
MVIYKDTQRP-
45 - 54 10
IMGT
----KD-----
49 - 50 2
LFR3 Chothia
-----GIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
56 - 87 32
AbM
-----GIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
56 - 87 32
Kabat
-----GIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
56 - 87 32
Contact
----SGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
55 - 87 33
IMGT
TQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC
51 - 87 37
CDR-L3 Chothia
QAWDNSASI
88 - 96 9
AbM
QAWDNSASI
88 - 96 9
Kabat
QAWDNSASI
88 - 96 9
Contact
QAWDNSAS-
88 - 95 8
IMGT
QAWDNSASI
88 - 96 9
LFR4 Chothia
-FGGGTKLTVLGQP
97 - 109 13
AbM
-FGGGTKLTVLGQP
97 - 109 13
Kabat
-FGGGTKLTVLGQP
97 - 109 13
Contact
IFGGGTKLTVLGQP
96 - 109 14
IMGT
-FGGGTKLTVLGQP
97 - 109 13
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 8fab_C
Source PDB  8fab  Submitted 23-MAR-1992  Updated 24-FEB-2009
Name
CRYSTAL STRUCTURE OF THE FAB FRAGMENT FROM THE HUMAN MYELOMA IMMUNOGLOBULIN IGG HIL AT 1.8 ANGSTROMS RESOLUTION
Organism
Homo sapiens
Human Subgroup Lambda Light chain subgroup III
Chain Type Light
Pairing 8fab_D
Identical Protein Sequences PDB: 8fab_A
References
STRONG K., CAMPBELL R., ROSE R., PETSKO A., SHARON J., MARGOLIES N.
'THREE-DIMENSIONAL STRUCTURE OF MURINE ANTI-P-AZOPHENYLARSONATE FAB 36-71. 1. X-RAY CRYSTALLOGRAPHY, SITE-DIRECTED MUTAGENESIS, AND MODELING OF THE COMPLEX WITH HAPTEN.'
BIOCHEMISTRY V. 30 3739 1991 ISSN 0006-2960
Sequences
Amino Acid Sequence:
SYELTQPPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQR
FSSSTSGTTVTLTISGVQAEDEADYYCQAWDNSASIFGGGTKLTVLGQPKAAPSVTLFPP
SSEELQANKATLVCLISDFYPGAVTVAWKADSSPIKAGVETTTPSKQSNNKYAASSYLSL
TPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
8fab_D
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
8fab_C
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual