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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
DVLMTQTPLSLPVSLGDQASISC
1 - 23 23
CDR-L1
RSSQSIVHGNGNTYLE
24 - 39 16
LFR2
WYLQKPGQSPKLLIY
40 - 54 15
CDR-L2
KISNRFS
55 - 61 7
LFR3
GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
62 - 93 32
CDR-L3
FQGSHVPYT
94 - 102 9
LFR4
FGGGTKLEIKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN
115 - 217 103
217
Region Sequence Fragment Residues Length
LFR1
DVLMTQTPLSLPVSLGDQASISC
1 - 23 23
CDR-L1
RSSQSIVHGNGNTYLE
24 - 39 16
LFR2
WYLQKPGQSPKLLIY
40 - 54 15
CDR-L2
KISNRFS
55 - 61 7
LFR3
GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
62 - 93 32
CDR-L3
FQGSHVPYT
94 - 102 9
LFR4
FGGGTKLEIKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN
115 - 217 103
217
Region Sequence Fragment Residues Length
LFR1
DVLMTQTPLSLPVSLGDQASISC
1 - 23 23
CDR-L1
RSSQSIVHGNGNTYLE
24 - 39 16
LFR2
WYLQKPGQSPKLLIY
40 - 54 15
CDR-L2
KISNRFS
55 - 61 7
LFR3
GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
62 - 93 32
CDR-L3
FQGSHVPYT
94 - 102 9
LFR4
FGGGTKLEIKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN
115 - 217 103
217
Region Sequence Fragment Residues Length
LFR1
DVLMTQTPLSLPVSLGDQASISCRSSQSI
1 - 29 29
CDR-L1
VHGNGNTYLEWY
30 - 41 12
LFR2
LQKPGQSPK
42 - 50 9
CDR-L2
LLIYKISNRF
51 - 60 10
LFR3
SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
61 - 93 33
CDR-L3
FQGSHVPY
94 - 101 8
LFR4
TFGGGTKLEIKRA
102 - 114 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN
115 - 217 103
217
Region Sequence Fragment Residues Length
LFR1
DVLMTQTPLSLPVSLGDQASISCRSS
1 - 26 26
CDR-L1
QSIVHGNGNTY
27 - 37 11
LFR2
LEWYLQKPGQSPKLLIY
38 - 54 17
CDR-L2
KI
55 - 56 2
LFR3
SNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
57 - 93 37
CDR-L3
FQGSHVPYT
94 - 102 9
LFR4
FGGGTKLEIKRA
103 - 114 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN
115 - 217 103
217
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
DVLMTQTPLSLPVSLGDQASISC------
1 - 23 23
AbM
DVLMTQTPLSLPVSLGDQASISC------
1 - 23 23
Kabat
DVLMTQTPLSLPVSLGDQASISC------
1 - 23 23
Contact
DVLMTQTPLSLPVSLGDQASISCRSSQSI
1 - 29 29
IMGT
DVLMTQTPLSLPVSLGDQASISCRSS---
1 - 26 26
CDR-L1 Chothia
RSSQSIVHGNGNTYLE--
24 - 39 16
AbM
RSSQSIVHGNGNTYLE--
24 - 39 16
Kabat
RSSQSIVHGNGNTYLE--
24 - 39 16
Contact
------VHGNGNTYLEWY
30 - 41 12
IMGT
---QSIVHGNGNTY----
27 - 37 11
LFR2 Chothia
--WYLQKPGQSPKLLIY
40 - 54 15
AbM
--WYLQKPGQSPKLLIY
40 - 54 15
Kabat
--WYLQKPGQSPKLLIY
40 - 54 15
Contact
----LQKPGQSPK----
42 - 50 9
IMGT
LEWYLQKPGQSPKLLIY
38 - 54 17
CDR-L2 Chothia
----KISNRFS
55 - 61 7
AbM
----KISNRFS
55 - 61 7
Kabat
----KISNRFS
55 - 61 7
Contact
LLIYKISNRF-
51 - 60 10
IMGT
----KI-----
55 - 56 2
LFR3 Chothia
-----GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
62 - 93 32
AbM
-----GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
62 - 93 32
Kabat
-----GVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
62 - 93 32
Contact
----SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
61 - 93 33
IMGT
SNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC
57 - 93 37
CDR-L3 Chothia
FQGSHVPYT
94 - 102 9
AbM
FQGSHVPYT
94 - 102 9
Kabat
FQGSHVPYT
94 - 102 9
Contact
FQGSHVPY-
94 - 101 8
IMGT
FQGSHVPYT
94 - 102 9
LFR4 Chothia
-FGGGTKLEIKRA
103 - 114 12
AbM
-FGGGTKLEIKRA
103 - 114 12
Kabat
-FGGGTKLEIKRA
103 - 114 12
Contact
TFGGGTKLEIKRA
102 - 114 13
IMGT
-FGGGTKLEIKRA
103 - 114 12
Humanness

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Accession & Annotations
Accession 2jel_L
Source PDB  2jel  Submitted 24-FEB-1998  Updated 18-APR-2018
Name
JEL42 FAB/HPR COMPLEX
Organism
Mus musculus
Chain Type Light
Pairing 2jel_H
Identical Protein Sequences None
References
PRASAD L., WAYGOOD B., LEE S., DELBAERE J.
'THE 2.5 A RESOLUTION STRUCTURE OF THE JEL42 FAB FRAGMENT/HPR COMPLEX'
J.MOL.BIOL. V. 280 829 1998 ISSN 0022-2836
Sequences
Amino Acid Sequence:
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHGNGNTYLEWYLQKPGQSPKLLIYKISNRF
SGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRADAAPTV
SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIGDGARQNGVLNSWTDQDSKDSTYSM
SSTLTLTKDEYERHNSYTCEATHKTSDSPIVKSFNRN

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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No experimental structure

abYmod homology modelling

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Chains
2jel_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2jel_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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