abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVQPVETGGGLVQPKGSLKLSCAAS
1 - 25 25
CDR-H1
GFSFNTN
26 - 32 7
HFR2
AMNWVRQAPGKGLEWVARI
33 - 51 19
CDR-H2
RSKSNNYA
52 - 59 8
HFR3
TYYADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYCVR
60 - 100 41
CDR-H3
DQTGTAWFAY
101 - 110 10
HFR4
WGQGTLVTVSA
111 - 121 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSG
LYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE
122 - 219 98
219
Region Sequence Fragment Residues Length
HFR1
EVQPVETGGGLVQPKGSLKLSCAAS
1 - 25 25
CDR-H1
GFSFNTNAMN
26 - 35 10
HFR2
WVRQAPGKGLEWVA
36 - 49 14
CDR-H2
RIRSKSNNYATY
50 - 61 12
HFR3
YADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYCVR
62 - 100 39
CDR-H3
DQTGTAWFAY
101 - 110 10
HFR4
WGQGTLVTVSA
111 - 121 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSG
LYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE
122 - 219 98
219
Region Sequence Fragment Residues Length
HFR1
EVQPVETGGGLVQPKGSLKLSCAASGFSFN
1 - 30 30
CDR-H1
TNAMN
31 - 35 5
HFR2
WVRQAPGKGLEWVA
36 - 49 14
CDR-H2
RIRSKSNNYATYYADSVKD
50 - 68 19
HFR3
RFTISRDDSQNMLYLQMNNLKTEDTAMYYCVR
69 - 100 32
CDR-H3
DQTGTAWFAY
101 - 110 10
HFR4
WGQGTLVTVSA
111 - 121 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSG
LYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE
122 - 219 98
219
Region Sequence Fragment Residues Length
HFR1
EVQPVETGGGLVQPKGSLKLSCAASGFSF
1 - 29 29
CDR-H1
NTNAMN
30 - 35 6
HFR2
WVRQAPGKGLE
36 - 46 11
CDR-H2
WVARIRSKSNNYATY
47 - 61 15
HFR3
YADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYC
62 - 98 37
CDR-H3
VRDQTGTAWFA
99 - 109 11
HFR4
YWGQGTLVTVSA
110 - 121 12
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSG
LYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE
122 - 219 98
219
Region Sequence Fragment Residues Length
HFR1
EVQPVETGGGLVQPKGSLKLSCAAS
1 - 25 25
CDR-H1
GFSFNTNA
26 - 33 8
HFR2
MNWVRQAPGKGLEWVAR
34 - 50 17
CDR-H2
IRSKSNNYAT
51 - 60 10
HFR3
YYADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYC
61 - 98 38
CDR-H3
VRDQTGTAWFAY
99 - 110 12
HFR4
WGQGTLVTVSA
111 - 121 11
Tail
AKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSG
LYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE
122 - 219 98
219
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVQPVETGGGLVQPKGSLKLSCAAS-----
1 - 25 25
AbM
EVQPVETGGGLVQPKGSLKLSCAAS-----
1 - 25 25
Kabat
EVQPVETGGGLVQPKGSLKLSCAASGFSFN
1 - 30 30
Contact
EVQPVETGGGLVQPKGSLKLSCAASGFSF-
1 - 29 29
IMGT
EVQPVETGGGLVQPKGSLKLSCAAS-----
1 - 25 25
CDR-H1 Chothia
GFSFNTN---
26 - 32 7
AbM
GFSFNTNAMN
26 - 35 10
Kabat
-----TNAMN
31 - 35 5
Contact
----NTNAMN
30 - 35 6
IMGT
GFSFNTNA--
26 - 33 8
HFR2 Chothia
AMNWVRQAPGKGLEWVARI
33 - 51 19
AbM
---WVRQAPGKGLEWVA--
36 - 49 14
Kabat
---WVRQAPGKGLEWVA--
36 - 49 14
Contact
---WVRQAPGKGLE-----
36 - 46 11
IMGT
-MNWVRQAPGKGLEWVAR-
34 - 50 17
CDR-H2 Chothia
-----RSKSNNYA---------
52 - 59 8
AbM
---RIRSKSNNYATY-------
50 - 61 12
Kabat
---RIRSKSNNYATYYADSVKD
50 - 68 19
Contact
WVARIRSKSNNYATY-------
47 - 61 15
IMGT
----IRSKSNNYAT--------
51 - 60 10
HFR3 Chothia
TYYADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYCVR
60 - 100 41
AbM
--YADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYCVR
62 - 100 39
Kabat
---------RFTISRDDSQNMLYLQMNNLKTEDTAMYYCVR
69 - 100 32
Contact
--YADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYC--
62 - 98 37
IMGT
-YYADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYC--
61 - 98 38
CDR-H3 Chothia
--DQTGTAWFAY
101 - 110 10
AbM
--DQTGTAWFAY
101 - 110 10
Kabat
--DQTGTAWFAY
101 - 110 10
Contact
VRDQTGTAWFA-
99 - 109 11
IMGT
VRDQTGTAWFAY
99 - 110 12
HFR4 Chothia
-WGQGTLVTVSA
111 - 121 11
AbM
-WGQGTLVTVSA
111 - 121 11
Kabat
-WGQGTLVTVSA
111 - 121 11
Contact
YWGQGTLVTVSA
110 - 121 12
IMGT
-WGQGTLVTVSA
111 - 121 11
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 1nbv_H
Source PDB  1nbv  Submitted 16-MAR-1993  Updated 14-AUG-2019
Name
AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE- DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE- FAB COMPLEX
Organism
Mus musculus
Chain Type Heavy
Pairing 1nbv_L
Identical Protein Sequences PDB: 1cbv_H
References
HERRON N., HE M., BALLARD W., BLIER R., PACE E., BOTHWELL L., VOSS JR W., EDMUNDSON B.
'AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX.'
PROTEINS V. 11 159 1991 ISSN 0887-3585
Sequences
Amino Acid Sequence:
EVQPVETGGGLVQPKGSLKLSCAASGFSFNTNAMNWVRQAPGKGLEWVARIRSKSNNYAT
YYADSVKDRFTISRDDSQNMLYLQMNNLKTEDTAMYYCVRDQTGTAWFAYWGQGTLVTVS
AAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQS
GLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLE

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
1nbv_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1nbv_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual