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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
LFR1
EIVLTQSPAITAASLGQKVTITC
1 - 23 23
CDR-L1
SASSSVSSLH
24 - 33 10
LFR2
WYQQKSGTSPKPWIY
34 - 48 15
CDR-L2
EISKLAS
49 - 55 7
LFR3
GVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
56 - 87 32
CDR-L3
QQWTYPLIT
88 - 96 9
LFR4
FGAGTKLELKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
EIVLTQSPAITAASLGQKVTITC
1 - 23 23
CDR-L1
SASSSVSSLH
24 - 33 10
LFR2
WYQQKSGTSPKPWIY
34 - 48 15
CDR-L2
EISKLAS
49 - 55 7
LFR3
GVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
56 - 87 32
CDR-L3
QQWTYPLIT
88 - 96 9
LFR4
FGAGTKLELKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
EIVLTQSPAITAASLGQKVTITC
1 - 23 23
CDR-L1
SASSSVSSLH
24 - 33 10
LFR2
WYQQKSGTSPKPWIY
34 - 48 15
CDR-L2
EISKLAS
49 - 55 7
LFR3
GVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
56 - 87 32
CDR-L3
QQWTYPLIT
88 - 96 9
LFR4
FGAGTKLELKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
EIVLTQSPAITAASLGQKVTITCSASSSV
1 - 29 29
CDR-L1
SSLHWY
30 - 35 6
LFR2
QQKSGTSPK
36 - 44 9
CDR-L2
PWIYEISKLA
45 - 54 10
LFR3
SGVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
55 - 87 33
CDR-L3
QQWTYPLI
88 - 95 8
LFR4
TFGAGTKLELKRA
96 - 108 13
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Sequence Fragment Residues Length
LFR1
EIVLTQSPAITAASLGQKVTITCSAS
1 - 26 26
CDR-L1
SSVSS
27 - 31 5
LFR2
LHWYQQKSGTSPKPWIY
32 - 48 17
CDR-L2
EI
49 - 50 2
LFR3
SKLASGVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
51 - 87 37
CDR-L3
QQWTYPLIT
88 - 96 9
LFR4
FGAGTKLELKRA
97 - 108 12
Tail
DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK
DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
109 - 213 105
213
Region Definition Sequence Fragment Residues Length
LFR1 Chothia
EIVLTQSPAITAASLGQKVTITC------
1 - 23 23
AbM
EIVLTQSPAITAASLGQKVTITC------
1 - 23 23
Kabat
EIVLTQSPAITAASLGQKVTITC------
1 - 23 23
Contact
EIVLTQSPAITAASLGQKVTITCSASSSV
1 - 29 29
IMGT
EIVLTQSPAITAASLGQKVTITCSAS---
1 - 26 26
CDR-L1 Chothia
SASSSVSSLH--
24 - 33 10
AbM
SASSSVSSLH--
24 - 33 10
Kabat
SASSSVSSLH--
24 - 33 10
Contact
------SSLHWY
30 - 35 6
IMGT
---SSVSS----
27 - 31 5
LFR2 Chothia
--WYQQKSGTSPKPWIY
34 - 48 15
AbM
--WYQQKSGTSPKPWIY
34 - 48 15
Kabat
--WYQQKSGTSPKPWIY
34 - 48 15
Contact
----QQKSGTSPK----
36 - 44 9
IMGT
LHWYQQKSGTSPKPWIY
32 - 48 17
CDR-L2 Chothia
----EISKLAS
49 - 55 7
AbM
----EISKLAS
49 - 55 7
Kabat
----EISKLAS
49 - 55 7
Contact
PWIYEISKLA-
45 - 54 10
IMGT
----EI-----
49 - 50 2
LFR3 Chothia
-----GVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
56 - 87 32
AbM
-----GVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
56 - 87 32
Kabat
-----GVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
56 - 87 32
Contact
----SGVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
55 - 87 33
IMGT
SKLASGVPARFSGSGSGTSYSLTINTMEAEDAAIYYC
51 - 87 37
CDR-L3 Chothia
QQWTYPLIT
88 - 96 9
AbM
QQWTYPLIT
88 - 96 9
Kabat
QQWTYPLIT
88 - 96 9
Contact
QQWTYPLI-
88 - 95 8
IMGT
QQWTYPLIT
88 - 96 9
LFR4 Chothia
-FGAGTKLELKRA
97 - 108 12
AbM
-FGAGTKLELKRA
97 - 108 12
Kabat
-FGAGTKLELKRA
97 - 108 12
Contact
TFGAGTKLELKRA
96 - 108 13
IMGT
-FGAGTKLELKRA
97 - 108 12
Humanness

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Accession & Annotations
Accession 2fbj_L
Source PDB  2fbj  Submitted 18-AUG-1989  Updated 29-JUL-2020
Name
REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING IMMUNOGLOBULIN FAB J539 AT 1.95-ANGSTROMS RESOLUTION
Organism
Mus musculus
Chain Type Light
Pairing 2fbj_H
Identical Protein Sequences None
References
BHAT N., PADLAN A., DAVIES R.
'REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING IMMUNOGLOBULIN FAB J539 AT 1.95-ANGSTROMS RESOLUTION'
TO BE PUBLISHED
Sequences
Amino Acid Sequence:
EIVLTQSPAITAASLGQKVTITCSASSSVSSLHWYQQKSGTSPKPWIYEISKLASGVPAR
FSGSGSGTSYSLTINTMEAEDAAIYYCQQWTYPLITFGAGTKLELKRADAAPTVSIFPPS
SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL
TKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
2fbj_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2fbj_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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