abYsis
  • Search
    Basic Search Sequence Search Structure Search
  • Annotate
  • Paired
  • Blast
  • Import
  • Tools
    Align Amino Acids & Regions Canonical Class Statistics Licence & Info
  • Manual

  • Summary
  • Canonical Classes
  • Germline View
  • Humanize
  • Structure
  • Library
Download
Numbering & Regions

Calculating, please wait ...

Nothing to show.
Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
EVKLLESGGGLVQPGGSLKLSCAAS
1 - 25 25
CDR-H1
GFDFSKY
26 - 32 7
HFR2
WMSWVRQAPGKGLEWIGEI
33 - 51 19
CDR-H2
HPDSGT
52 - 57 6
HFR3
INYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCAR
58 - 98 41
CDR-H3
LHYYGYNAY
99 - 107 9
HFR4
WGQGTLVTVSA
108 - 118 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG
119 - 220 102
220
Region Sequence Fragment Residues Length
HFR1
EVKLLESGGGLVQPGGSLKLSCAAS
1 - 25 25
CDR-H1
GFDFSKYWMS
26 - 35 10
HFR2
WVRQAPGKGLEWIG
36 - 49 14
CDR-H2
EIHPDSGTIN
50 - 59 10
HFR3
YTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCAR
60 - 98 39
CDR-H3
LHYYGYNAY
99 - 107 9
HFR4
WGQGTLVTVSA
108 - 118 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG
119 - 220 102
220
Region Sequence Fragment Residues Length
HFR1
EVKLLESGGGLVQPGGSLKLSCAASGFDFS
1 - 30 30
CDR-H1
KYWMS
31 - 35 5
HFR2
WVRQAPGKGLEWIG
36 - 49 14
CDR-H2
EIHPDSGTINYTPSLKD
50 - 66 17
HFR3
KFIISRDNAKNSLYLQMSKVRSEDTALYYCAR
67 - 98 32
CDR-H3
LHYYGYNAY
99 - 107 9
HFR4
WGQGTLVTVSA
108 - 118 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG
119 - 220 102
220
Region Sequence Fragment Residues Length
HFR1
EVKLLESGGGLVQPGGSLKLSCAASGFDF
1 - 29 29
CDR-H1
SKYWMS
30 - 35 6
HFR2
WVRQAPGKGLE
36 - 46 11
CDR-H2
WIGEIHPDSGTIN
47 - 59 13
HFR3
YTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYC
60 - 96 37
CDR-H3
ARLHYYGYNA
97 - 106 10
HFR4
YWGQGTLVTVSA
107 - 118 12
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG
119 - 220 102
220
Region Sequence Fragment Residues Length
HFR1
EVKLLESGGGLVQPGGSLKLSCAAS
1 - 25 25
CDR-H1
GFDFSKYW
26 - 33 8
HFR2
MSWVRQAPGKGLEWIGE
34 - 50 17
CDR-H2
IHPDSGTI
51 - 58 8
HFR3
NYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYC
59 - 96 38
CDR-H3
ARLHYYGYNAY
97 - 107 11
HFR4
WGQGTLVTVSA
108 - 118 11
Tail
ESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASG
GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG
119 - 220 102
220
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
EVKLLESGGGLVQPGGSLKLSCAAS-----
1 - 25 25
AbM
EVKLLESGGGLVQPGGSLKLSCAAS-----
1 - 25 25
Kabat
EVKLLESGGGLVQPGGSLKLSCAASGFDFS
1 - 30 30
Contact
EVKLLESGGGLVQPGGSLKLSCAASGFDF-
1 - 29 29
IMGT
EVKLLESGGGLVQPGGSLKLSCAAS-----
1 - 25 25
CDR-H1 Chothia
GFDFSKY---
26 - 32 7
AbM
GFDFSKYWMS
26 - 35 10
Kabat
-----KYWMS
31 - 35 5
Contact
----SKYWMS
30 - 35 6
IMGT
GFDFSKYW--
26 - 33 8
HFR2 Chothia
WMSWVRQAPGKGLEWIGEI
33 - 51 19
AbM
---WVRQAPGKGLEWIG--
36 - 49 14
Kabat
---WVRQAPGKGLEWIG--
36 - 49 14
Contact
---WVRQAPGKGLE-----
36 - 46 11
IMGT
-MSWVRQAPGKGLEWIGE-
34 - 50 17
CDR-H2 Chothia
-----HPDSGT---------
52 - 57 6
AbM
---EIHPDSGTIN-------
50 - 59 10
Kabat
---EIHPDSGTINYTPSLKD
50 - 66 17
Contact
WIGEIHPDSGTIN-------
47 - 59 13
IMGT
----IHPDSGTI--------
51 - 58 8
HFR3 Chothia
INYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCAR
58 - 98 41
AbM
--YTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCAR
60 - 98 39
Kabat
---------KFIISRDNAKNSLYLQMSKVRSEDTALYYCAR
67 - 98 32
Contact
--YTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYC--
60 - 96 37
IMGT
-NYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYC--
59 - 96 38
CDR-H3 Chothia
--LHYYGYNAY
99 - 107 9
AbM
--LHYYGYNAY
99 - 107 9
Kabat
--LHYYGYNAY
99 - 107 9
Contact
ARLHYYGYNA-
97 - 106 10
IMGT
ARLHYYGYNAY
97 - 107 11
HFR4 Chothia
-WGQGTLVTVSA
108 - 118 11
AbM
-WGQGTLVTVSA
108 - 118 11
Kabat
-WGQGTLVTVSA
108 - 118 11
Contact
YWGQGTLVTVSA
107 - 118 12
IMGT
-WGQGTLVTVSA
108 - 118 11
Humanness

Calculating, please wait ...

Accession & Annotations
Accession 2fbj_H
Source PDB  2fbj  Submitted 18-AUG-1989  Updated 29-JUL-2020
Name
REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING IMMUNOGLOBULIN FAB J539 AT 1.95-ANGSTROMS RESOLUTION
Organism
Mus musculus
Chain Type Heavy
Pairing 2fbj_L
Identical Protein Sequences None
References
BHAT N., PADLAN A., DAVIES R.
'REFINED CRYSTAL STRUCTURE OF THE GALACTAN-BINDING IMMUNOGLOBULIN FAB J539 AT 1.95-ANGSTROMS RESOLUTION'
TO BE PUBLISHED
Sequences
Amino Acid Sequence:
EVKLLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINY
TPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES
ARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGR
YTMSNQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG

Calculating, please wait ...

Nothing to show.

Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

Calculating, please wait ...

Nothing to show.

Calculating, please wait ...

Nothing to show.

No coordinate data for one or more of your sequences.

Use Import to load your own coordinate data where available.

No experimental structure

abYmod homology modelling

Note: following issues may prevent a model being generated:


Homology modelling failed because :-



Energy minimised    
Rapid    

Running Please wait - abYmod building model

Structure Loading, please wait ...

Chains
2fbj_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
2fbj_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

Calculating, please wait ...

Nothing to show.

Licence Required

This feature is only available in the fully-licensed version of abYsis

For further information please contact specialist distributor ebisu, or alternatively see the UCLB e-licensing website.

This public version of abYsis is made available largely through the generous support of commercial licensees.

Open Manual