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Numbering & Regions

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Region Sequence Details
Regions Definition:
Region Sequence Fragment Residues Length
HFR1
DVQLVESGGGLVQPGGSRKLSCAAS
1 - 25 25
CDR-H1
GFTFSSF
26 - 32 7
HFR2
GMHWVRQAPEKGLEWVAYI
33 - 51 19
CDR-H2
SSGSST
52 - 57 6
HFR3
LHYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCAR
58 - 98 41
CDR-H3
WGNYPYYAMDY
99 - 109 11
HFR4
WGQGTSVTVSS
110 - 120 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
121 - 222 102
222
Region Sequence Fragment Residues Length
HFR1
DVQLVESGGGLVQPGGSRKLSCAAS
1 - 25 25
CDR-H1
GFTFSSFGMH
26 - 35 10
HFR2
WVRQAPEKGLEWVA
36 - 49 14
CDR-H2
YISSGSSTLH
50 - 59 10
HFR3
YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCAR
60 - 98 39
CDR-H3
WGNYPYYAMDY
99 - 109 11
HFR4
WGQGTSVTVSS
110 - 120 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
121 - 222 102
222
Region Sequence Fragment Residues Length
HFR1
DVQLVESGGGLVQPGGSRKLSCAASGFTFS
1 - 30 30
CDR-H1
SFGMH
31 - 35 5
HFR2
WVRQAPEKGLEWVA
36 - 49 14
CDR-H2
YISSGSSTLHYADTVKG
50 - 66 17
HFR3
RFTISRDNPKNTLFLQMTSLRSEDTGMYYCAR
67 - 98 32
CDR-H3
WGNYPYYAMDY
99 - 109 11
HFR4
WGQGTSVTVSS
110 - 120 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
121 - 222 102
222
Region Sequence Fragment Residues Length
HFR1
DVQLVESGGGLVQPGGSRKLSCAASGFTF
1 - 29 29
CDR-H1
SSFGMH
30 - 35 6
HFR2
WVRQAPEKGLE
36 - 46 11
CDR-H2
WVAYISSGSSTLH
47 - 59 13
HFR3
YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYC
60 - 96 37
CDR-H3
ARWGNYPYYAMD
97 - 108 12
HFR4
YWGQGTSVTVSS
109 - 120 12
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
121 - 222 102
222
Region Sequence Fragment Residues Length
HFR1
DVQLVESGGGLVQPGGSRKLSCAAS
1 - 25 25
CDR-H1
GFTFSSFG
26 - 33 8
HFR2
MHWVRQAPEKGLEWVAY
34 - 50 17
CDR-H2
ISSGSSTL
51 - 58 8
HFR3
HYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYC
59 - 96 38
CDR-H3
ARWGNYPYYAMDY
97 - 109 13
HFR4
WGQGTSVTVSS
110 - 120 11
Tail
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC
121 - 222 102
222
Region Definition Sequence Fragment Residues Length
HFR1 Chothia
DVQLVESGGGLVQPGGSRKLSCAAS-----
1 - 25 25
AbM
DVQLVESGGGLVQPGGSRKLSCAAS-----
1 - 25 25
Kabat
DVQLVESGGGLVQPGGSRKLSCAASGFTFS
1 - 30 30
Contact
DVQLVESGGGLVQPGGSRKLSCAASGFTF-
1 - 29 29
IMGT
DVQLVESGGGLVQPGGSRKLSCAAS-----
1 - 25 25
CDR-H1 Chothia
GFTFSSF---
26 - 32 7
AbM
GFTFSSFGMH
26 - 35 10
Kabat
-----SFGMH
31 - 35 5
Contact
----SSFGMH
30 - 35 6
IMGT
GFTFSSFG--
26 - 33 8
HFR2 Chothia
GMHWVRQAPEKGLEWVAYI
33 - 51 19
AbM
---WVRQAPEKGLEWVA--
36 - 49 14
Kabat
---WVRQAPEKGLEWVA--
36 - 49 14
Contact
---WVRQAPEKGLE-----
36 - 46 11
IMGT
-MHWVRQAPEKGLEWVAY-
34 - 50 17
CDR-H2 Chothia
-----SSGSST---------
52 - 57 6
AbM
---YISSGSSTLH-------
50 - 59 10
Kabat
---YISSGSSTLHYADTVKG
50 - 66 17
Contact
WVAYISSGSSTLH-------
47 - 59 13
IMGT
----ISSGSSTL--------
51 - 58 8
HFR3 Chothia
LHYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCAR
58 - 98 41
AbM
--YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCAR
60 - 98 39
Kabat
---------RFTISRDNPKNTLFLQMTSLRSEDTGMYYCAR
67 - 98 32
Contact
--YADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYC--
60 - 96 37
IMGT
-HYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYC--
59 - 96 38
CDR-H3 Chothia
--WGNYPYYAMDY
99 - 109 11
AbM
--WGNYPYYAMDY
99 - 109 11
Kabat
--WGNYPYYAMDY
99 - 109 11
Contact
ARWGNYPYYAMD-
97 - 108 12
IMGT
ARWGNYPYYAMDY
97 - 109 13
HFR4 Chothia
-WGQGTSVTVSS
110 - 120 11
AbM
-WGQGTSVTVSS
110 - 120 11
Kabat
-WGQGTSVTVSS
110 - 120 11
Contact
YWGQGTSVTVSS
109 - 120 12
IMGT
-WGQGTSVTVSS
110 - 120 11
Humanness

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Accession & Annotations
Accession 1igc_H
Source PDB  1igc  Submitted 05-AUG-1994  Updated 24-FEB-2009
Name
IGG1 FAB FRAGMENT (MOPC21) COMPLEX WITH DOMAIN III OF PROTEIN G FROM STREPTOCOCCUS
Organism
Mus musculus
Chain Type Heavy
Pairing 1igc_L
Identical Protein Sequences None
References
DERRICK P., WIGLEY B.
'THE THIRD IGG-BINDING DOMAIN FROM STREPTOCOCCAL PROTEIN G. AN ANALYSIS BY X-RAY CRYSTALLOGRAPHY OF THE STRUCTURE ALONE AND IN A COMPLEX WITH FAB.'
J.MOL.BIOL. V. 243 906 1994 ISSN 0022-2836
Sequences
Amino Acid Sequence:
DVQLVESGGGLVQPGGSRKLSCAASGFTFSSFGMHWVRQAPEKGLEWVAYISSGSSTLHY
ADTVKGRFTISRDNPKNTLFLQMTSLRSEDTGMYYCARWGNYPYYAMDYWGQGTSVTVSS
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD
LYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDC

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Germline Tools
Data Source:
Data Source V D J Exclude if warnings
NCBI Germline
V-BASE
Alignment settings:
Rank alignments by
Exclude identical hits
Search settings:
V-segment score threshold
D-segment score threshold
J-segment score threshold
Gaps:
Gap penalty

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abYmod homology modelling

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Chains
1igc_H
All Heavy
All HFR
All CDR-H
HFR1
CDR-H1
HFR2
CDR-H2
HFR3
CDR-H3
HFR4
Other Heavy
1igc_L
All Light
All LFR
All CDR-L
LFR1
CDR-L1
LFR2
CDR-L2
LFR3
CDR-L3
LFR4
Other Light
Colours
Labels
On
Off
Atoms
Main chain
All
Style
Wireframe
Ball and Stick
Spacefill
Cartoon
Backbone
Reset
Black
Reset
White

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